update range to 10000 bp
locus tag: FAM19471-i1-1.1_000781 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R01513 3-Phospho-D-glycerate:NAD+ 2-oxidoreductase; 3-Phospho-D-glycerate + NAD+ <=> 3-Phosphonooxypyruvate + NADH + H+ kornec00260kornec00270kornec00680kornec01100kornec01110kornec01120kornec01200kornec01230
Ortholog
 N0.HOG0000989 lactate dehydrogenase
KEGG gene
 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] kornec00260kornec00270kornec00680kornec01100kornec01110kornec01120kornec01200kornec01230
Eggnog Ortholog
 EO:COG0111
Eggnog Description
 ED:D-isomer specific 2-hydroxyacid dehydrogenase
EC Number
 EC:1.1.1.95 phosphoglycerate dehydrogenase; PHGDH (gene name); D-3-phosphoglycerate:NAD+ oxidoreductase; alpha-phosphoglycerate dehydrogenase; 3-phosphoglycerate dehydrogenase; 3-phosphoglyceric acid dehydrogenase; D-3-phosphoglycerate dehydrogenase; glycerate 3-phosphate dehydrogenase; glycerate-1,3-phosphate dehydrogenase; phosphoglycerate oxidoreductase; phosphoglyceric acid dehydrogenase; SerA; 3-phosphoglycerate:NAD+ 2-oxidoreductase; SerA 3PG dehydrogenase; 3PHP reductase kornec00260kornec00270kornec00680kornec01100kornec01110kornec01120
EC Number
 EC:1.1.1.399 2-oxoglutarate reductase; serA (gene name)
Gene Product
 3-phosphoglycerate dehydrogenase

Occurs in the following pathway maps:

Pathway Description
kornec00260 Glycine, serine and threonine metabolism
kornec00270 Cysteine and methionine metabolism
kornec00680 Methane metabolism
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01200 Carbon metabolism
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 53.8 %):

ATGTACCAAGTAAAAACAATTGATAAATTTGAATTAAGCGATTTTGCCCACGATCTACTTCAAATTTCTGACACGGACGCTCCGAACGCCCTGTTGGTTCGTAGCTCCCAGGTTGACGATGCCCTGATCAACGACCAACTGCTGGCGATCACCCGGGCCGGGATTGGTACCAATACCATCAACGTCAACGCCTGCACCGAAAACGGCACCGTCGTCTTAAACACCCCCGGTGCTAACGCCAACGCCGTTAAGGAATTGATCATCCAAGCTCTCTTCCGTTGCGTGCGCCCAATTGACCGGGCGATTGCAACCGTCAAAGACCTGACGGCCGAACCGGGAGCTGACCTCCAAGTGCTGGCCGAGGCGACGCGCAAGGAATTTATCGGCCGCGAATTATACGGGAAGACGATTGGGATTTTAGGCCTCGGGGCAATTGGCCAACGGGTTGCCGAAGCTAGTTACCACCTCGGGATGCAAGTCTTGGGTTATAACCGTAGTCCCAAGAACCTCCCCCACGTCGTTCAACTACCGACAATTGAAGAGGTCATGTCATTAGCCGACTTTGTGGTCGTCATGCTACCCCTGACCGAAGAAACCACCGGCCTGATCAACCGGGAACGGCTCCAACAGCTAAAACCGGACGCCTACCTCCTGAACTTTGGCCGTGGCGAAATCGTTAATAACCAAGACCTCCTCGAAGCACTGGCCAATGGCGAGCTGGCCGGCTACGTTAGTGACTTTCCAGCTAGCGACCTGCAAAACCAACCGGGGGTCACCCTCCTCCCTCACATCGGTGGCAACACCGAAGAGGCCCTGACCTTTAGCACCGATATGGCCTTACAAAACCTGCTTAACTTCTTAGAGAACGGTAGCGTCCGGACCTCCGTCAACTTTCCGCGCGTCGACCTCCCCTTTGATACCCCCCACCGAATCACCCTCTTTTACAAGGACCGGGCCAACCTGTGGCTCGATTTCGTCCAACTTTTAACTGACCAGGGCTTAACGGTCAAGGAAATGACGAGCAACGCCAAAAACGGCTACAGTTACGCCCTGATCAACACCGACCTCAGTGTGCTCAGCCAAGCGGAAATCGCCAACTTACGTCAACTCTTACAAGACCACGGTGACATCATTCGCTTCCGCTTCTTAACCAACCCATCTATGAACCCAGAGCTATAA

Protein sequence:

MYQVKTIDKFELSDFAHDLLQISDTDAPNALLVRSSQVDDALINDQLLAITRAGIGTNTINVNACTENGTVVLNTPGANANAVKELIIQALFRCVRPIDRAIATVKDLTAEPGADLQVLAEATRKEFIGRELYGKTIGILGLGAIGQRVAEASYHLGMQVLGYNRSPKNLPHVVQLPTIEEVMSLADFVVVMLPLTEETTGLINRERLQQLKPDAYLLNFGRGEIVNNQDLLEALANGELAGYVSDFPASDLQNQPGVTLLPHIGGNTEEALTFSTDMALQNLLNFLENGSVRTSVNFPRVDLPFDTPHRITLFYKDRANLWLDFVQLLTDQGLTVKEMTSNAKNGYSYALINTDLSVLSQAEIANLRQLLQDHGDIIRFRFLTNPSMNPEL

GenBank Info

locus_tag - FAM19471-i1-1.1_000781
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391199.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 3-phosphoglycerate dehydrogenase
protein_id - extdb:FAM19471-i1-1.1_000781

Gene Locus

Located on scaffold FAM19471-i1-1_scf11

FAM19471-i1-1.1_000780
FAM19471-i1-1.1_000782