update range to 10000 bp
locus tag: FAM19471-i1-1.1_000795 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0003012 ATP-dependent DNA helicase RecQ
KEGG gene
 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] kornec03018
Gene Ontology
 GO:1901363 heterocyclic compound binding
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140097 catalytic activity, acting on DNA
Gene Ontology
 GO:0097159 organic cyclic compound binding
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0071103 DNA conformation change
Gene Ontology
 GO:0070035 obsolete purine NTP-dependent helicase activity
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0051276 chromosome organization
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043590 bacterial nucleoid
Gene Ontology
 GO:0043232 intracellular non-membrane-bounded organelle
Gene Ontology
 GO:0043229 intracellular organelle
Gene Ontology
 GO:0043228 non-membrane-bounded organelle
Gene Ontology
 GO:0043226 organelle
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043140 -
Gene Ontology
 GO:0043138 3'-5' DNA helicase activity
Gene Ontology
 GO:0042623 -
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0032508 DNA duplex unwinding
Gene Ontology
 GO:0032392 DNA geometric change
Gene Ontology
 GO:0017111 ribonucleoside triphosphate phosphatase activity
Gene Ontology
 GO:0016887 ATP hydrolysis activity
Gene Ontology
 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Gene Ontology
 GO:0016817 hydrolase activity, acting on acid anhydrides
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016462 pyrophosphatase activity
Gene Ontology
 GO:0016043 cellular component organization
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009378 four-way junction helicase activity
Gene Ontology
 GO:0009295 nucleoid
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008094 ATP-dependent activity, acting on DNA
Gene Ontology
 GO:0008026 -
Gene Ontology
 GO:0006996 organelle organization
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006310 DNA recombination
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005694 chromosome
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0004386 helicase activity
Gene Ontology
 GO:0004003 -
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003678 DNA helicase activity
Gene Ontology
 GO:0003677 DNA binding
Gene Ontology
 GO:0003676 nucleic acid binding
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:recQ
Eggnog Ortholog
 EO:COG0514
Eggnog Description
 ED:ATP-dependent DNA helicase RecQ
EC Number
 EC:3.6.4.12 Transferred to 5.6.2.3 and 5.6.2.4
Gene Product
 ATP-dependent DNA helicase RecQ

Occurs in the following pathway maps:

Pathway Description
kornec03018 RNA degradation

Sequences

Nucleotide sequence (GC-content: 56.7 %):

GTGACCATTGATGAACAACAAGTCCGCACCGCACTGAAACGGTTTTTCGGTTTCGCTGACTTTCGTCCCGGACAAAGGGAGACGATTGAAGCGACGTTGGCGGGGAAGCCAACCCTGGCCGTCTTGCCAACCGGGGCCGGCAAAACCCTCCTTTACCAACTCCCGGGGGTAATGTTAGACGGCTTGGTGGTGGTCATCGCCCCCCTGATTTCCTTGATGCAAGATCAAGTTGATCGCCTGCGTAGCGATGGCTTAGGGCCGGTGGCGAGCCTCAATTCTAGCCTCGATTACCAAGAGCAACAGTGGGTGCTGAGCCACCTAGGGGAGCTTAAGTTTTTGTTTACTTCCCCGGAGACCTTGCTCAAGCCCGCCGTATTAAGGGCGTTGCACCGTCAACCGATTAGCCTGTTTGTCGTCGATGAGGCCCACTGCGTTTCCCAGTGGGGCCCTGATTTTCGTCCGGAATACCTCCGGGTTGCCCAGGCCATTCAAGCGGTCAACCCCGCGCGGCTATTGATGCTGACGGCTACGGCCACCCCCGCAATCCAAGATGATATCATTCAGCGTCTAGGCCTCAATCCGGCCGCGGTGGTGCGGGTCGTTAAATCGGTTAATCGCCCCAATATTTTCCTGGCCGTCCAAAAACTAGCTGACCAAGACGAAAAGCGGCGCCGCCTTCTCGAACTGGTCAACCAATTAGGGCCCAGTGGGGTGGTCTACCTCTCCAGCCGTGAGGGGGCCAACCAATTGGCGGACTGGTTAAATCAACAAGCCAACTTACGGGTGGCGGCTTACCACGCCGGGGTTGACCCCGTTGACCGCTACCGAATTCAGCAGCAGTTCTTAGGTGGAGAATTGGACCTAGTGGTGGCCACGTCGGCCTTTGGGATGGGGATTGATAAACAAGACATCCGTTACGTGATCCACTTTCAGATGCCGGGGAGTTTAGAAGCGTACGTCCAAGAGATTGGTCGGGCTGGTAGAGATGGCCGCCAGTCCTTAGCCGTGCTCTTATATTGTCACGGTGATGAGCAGTTGCCACTCTTGTTAAACCACGTCGATTTACCAAGCCCCGCCGTCTTAGATCAAATCAAGGCGGGCAAGGTGAAGGCCGATCTTTTAGGGGAGGCTAAGCGCGTGGTCACCTACTACCTGGACCAGGGAATGGACGGGCAGGCGGTGTGGCGCTTTTTTGCGGACCTAGAACAAAAGCGGGGCCGCCAGGTGCAACGGATGTTAAGTTACGTCGAGGAAGACAAGTGCCGGCGAACTAATTTACTAGCCTACTTTGGCCAAGCAAGTCTGGAGGCGGAGGTCGAGTGGTGTTGTGACCTGACCAACCGGGACTGGACGGTGACCGCTTTGCAACTGCCCGCGGTCAAACGGCGAGTGGCTTCGTCCGTCCTCGATTGGCGAAACCGGGTCGCAACTTTGTTCAACCGACAGGGGTTGGGCTAG

Protein sequence:

MTIDEQQVRTALKRFFGFADFRPGQRETIEATLAGKPTLAVLPTGAGKTLLYQLPGVMLDGLVVVIAPLISLMQDQVDRLRSDGLGPVASLNSSLDYQEQQWVLSHLGELKFLFTSPETLLKPAVLRALHRQPISLFVVDEAHCVSQWGPDFRPEYLRVAQAIQAVNPARLLMLTATATPAIQDDIIQRLGLNPAAVVRVVKSVNRPNIFLAVQKLADQDEKRRRLLELVNQLGPSGVVYLSSREGANQLADWLNQQANLRVAAYHAGVDPVDRYRIQQQFLGGELDLVVATSAFGMGIDKQDIRYVIHFQMPGSLEAYVQEIGRAGRDGRQSLAVLLYCHGDEQLPLLLNHVDLPSPAVLDQIKAGKVKADLLGEAKRVVTYYLDQGMDGQAVWRFFADLEQKRGRQVQRMLSYVEEDKCRRTNLLAYFGQASLEAEVEWCCDLTNRDWTVTALQLPAVKRRVASSVLDWRNRVATLFNRQGLG

GenBank Info

locus_tag - FAM19471-i1-1.1_000795
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003683188.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ATP-dependent DNA helicase RecQ
protein_id - extdb:FAM19471-i1-1.1_000795

Gene Locus

Located on scaffold FAM19471-i1-1_scf11

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0468: GO:0005694 chromosome
SL-0086: GO:0005737 cytoplasm
SL-0187: GO:0009295 nucleoid
FAM19471-i1-1.1_000794
FAM19471-i1-1.1_000796