update range to 10000 bp
locus tag: FAM19471-i1-1.1_000815 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R10147 L-aspartate-4-semialdehyde hydro-lyase [adding pyruvate and cyclizing; (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate-forming]; L-Aspartate 4-semialdehyde + Pyruvate <=> (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O kornec00261kornec00300kornec01100kornec01110kornec01120kornec01230
Ortholog
 N0.HOG0000972 4-hydroxy-tetrahydrodipicolinate synthase
KEGG gene
 K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] kornec00261kornec00300kornec01100kornec01110kornec01120kornec01230
Eggnog Protein
 EP:dapA
Eggnog Ortholog
 EO:COG0329
Eggnog Description
 ED:Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EC Number
 EC:4.3.3.7 4-hydroxy-tetrahydrodipicolinate synthase; dihydrodipicolinate synthase (incorrect); dihydropicolinate synthetase (incorrect); dihydrodipicolinic acid synthase (incorrect); L-aspartate-4-semialdehyde hydro-lyase (adding pyruvate and cyclizing); dapA (gene name). kornec00261kornec00300kornec01100kornec01110kornec01120
Gene Code
 dapA
Gene Product
 4-hydroxy-tetrahydrodipicolinate synthase

Occurs in the following pathway maps:

Pathway Description
kornec00261 Monobactam biosynthesis
kornec00300 Lysine biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 59.5 %):

ATGACAGAACTTACCAACGCCGATCTTTTAACCGCCATCGTTACCCCGTTTACCGACGAGGGGACGATTGACTACCCGGCCCTGGACCAATTAACTGAGCACCTGTTGCAGGCCGGTAACAACGGTTTCGTCGTCGGGGGGACAACCGGGGAGACGCCAACCCTGTCCCACGACGAAAAGATTGAACTCTACACCCACTTCGGTCGGTTGATTGCCGGTCGGGTACCGGTGATTGCCGGGACCGGGTCTAACAACACGGCCGAAACGATCGCCTTCACCAACGAGGTGGCCCAAATCGAGGGGATTGACTACGCTCTAGTGGTGGTGCCACCGTACAACAAGCCCAACCAACGGGGAATGTTAGCCCACTTCACGGCCGTTGCCGACGCGGTCGAATTGCCACTGATCATTTACAACATTCCGGGGCGGACCGGGGTCAAGATGGAAACTTCAACCGTCTTAACCCTGGCTGAACACCCCAACATCGCCGGGATCAAGCAGTGTGCCAGCCTGGAAGAATTCCAGACCCTGGTGGAAAACCGGCCGGCCGGCTTTGCCGTTTACACCGGTGAAGACGCCCAGGCCCTGACCACTAAGGTACTAGGGGGGGACGGGGTTATCTCCGTGGCCGCCCACAACTATGCGCCGCAGATGCGGGCCATGTACGACGCCCTTAGTGCGGGTAACTACCAAGTGGCCGCTAAGCTCCAACGCTGGTTGACCCCGCGGATGGCGGCCCTGTTCATGTTCCCGTCGCCTTCCCCGGTCAAGGCCGTTTTGGCGGCCCAGGGGTTGGCCACCGACCACTGCCGCCTGCCGATTTGCGACCTGACCGGAGAAGAAAAGGAGCAATTGGCAACCGCCCTGGGGTTACCTAGCGACGCCTTGGCGGGTCAATTACCAACCGACTTAGGGGAGGGACTTACCAATGACTAA

Protein sequence:

MTELTNADLLTAIVTPFTDEGTIDYPALDQLTEHLLQAGNNGFVVGGTTGETPTLSHDEKIELYTHFGRLIAGRVPVIAGTGSNNTAETIAFTNEVAQIEGIDYALVVVPPYNKPNQRGMLAHFTAVADAVELPLIIYNIPGRTGVKMETSTVLTLAEHPNIAGIKQCASLEEFQTLVENRPAGFAVYTGEDAQALTTKVLGGDGVISVAAHNYAPQMRAMYDALSAGNYQVAAKLQRWLTPRMAALFMFPSPSPVKAVLAAQGLATDHCRLPICDLTGEEKEQLATALGLPSDALAGQLPTDLGEGLTND

GenBank Info

gene - dapA
locus_tag - FAM19471-i1-1.1_000815
EC_number - 4.3.3.7
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638912.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 4-hydroxy-tetrahydrodipicolinate synthase
protein_id - extdb:FAM19471-i1-1.1_000815

Gene Locus

Located on scaffold FAM19471-i1-1_scf11

FAM19471-i1-1.1_000814
FAM19471-i1-1.1_000816