update range to 10000 bp
locus tag: FAM19471-i1-1.1_000820 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R02735 LL-2,6-Diaminoheptanedioate 2-epimerase; LL-2,6-Diaminoheptanedioate <=> meso-2,6-Diaminoheptanedioate kornec00300kornec01100kornec01110kornec01120kornec01230
Ortholog
 N0.HOG0001657 diaminopimelate epimerase
KEGG gene
 K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] kornec00300kornec01100kornec01110kornec01120kornec01230
Gene Ontology
 GO:1901607 alpha-amino acid biosynthetic process
Gene Ontology
 GO:1901605 alpha-amino acid metabolic process
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0047661 amino-acid racemase activity
Gene Ontology
 GO:0046451 diaminopimelate metabolic process
Gene Ontology
 GO:0046394 carboxylic acid biosynthetic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044283 small molecule biosynthetic process
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043648 dicarboxylic acid metabolic process
Gene Ontology
 GO:0043436 oxoacid metabolic process
Gene Ontology
 GO:0036361 racemase activity, acting on amino acids and derivatives
Gene Ontology
 GO:0019752 carboxylic acid metabolic process
Gene Ontology
 GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives
Gene Ontology
 GO:0016854 racemase and epimerase activity
Gene Ontology
 GO:0016853 isomerase activity
Gene Ontology
 GO:0016053 organic acid biosynthetic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009089 lysine biosynthetic process via diaminopimelate
Gene Ontology
 GO:0009085 lysine biosynthetic process
Gene Ontology
 GO:0009067 aspartate family amino acid biosynthetic process
Gene Ontology
 GO:0009066 aspartate family amino acid metabolic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008837 diaminopimelate epimerase activity
Gene Ontology
 GO:0008652 cellular amino acid biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006553 lysine metabolic process
Gene Ontology
 GO:0006520 cellular amino acid metabolic process
Gene Ontology
 GO:0006082 organic acid metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:dapF
Eggnog Ortholog
 EO:COG0253
Eggnog Description
 ED:Catalyzes the stereoinversion of LL-2
EC Number
 EC:5.1.1.7 diaminopimelate epimerase kornec00300kornec01100kornec01110kornec01120
Gene Product
 diaminopimelate epimerase

Occurs in the following pathway maps:

Pathway Description
kornec00300 Lysine biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 60.1 %):

ATGGCACAGTTACTAAAGGTTCACGGATCACAAAACCAATTCTTCTTACTCGACCAAACCACCCTTGCCCGCCCGCTTTCCGACCCGGAACTAAGAGCGCTGGGCCTTCAATTATGCGATCCAGCTACCGGAATTTTAGGTGGGGCCGATGGCTTGCTCGTGGTTAACGACAGCAACAACCCGGCCGCCAGCGGCCAAATGCGGGTGATCAACGCCGACGGATCTGAAGCCTCTATGTGTGGCAACGGCCTGCGCACCGTCGCCCGCTACCTGGCCGAAAAAACCAACCAGACCCGCTTCCAAGTCGAAACGATGAAGGCCGACCTGACCGTGGCCTACCACGACGACTTCTTCCCCAGCGTGCCGGGCTACGCCGTCGAAATTTCACCGGTCCGTTTTAACAAAGAGGCCCTTCCCTTTGACCAGGTTGGCCACGAACGGCTTTTAGACACCCTGGTGCCAGAGTTTGTGCCCGGCTGGCGCTTCTCCGCCCTGGCGGTGCCCAATCCCCACCTGATCGCCTTTGTCAGCGACGAAGAACTCGCCGGGCCGGTATTGGGGGAACTGGGCCAACGCCTCAACGGGGAGAACCCCTACTTTGCAGACGGGGTCAACATCAACTTCGCCCACATCCTCGGTCCCAACGAACTCTTCGTCCGGACCTATGAGCGCGGGGTCGGCTTCACCAACGCCTGCGGGACCGGGATGTCGGCGACGACCCTGGCCTTCGCGCTAACCCACCCCGACCAGGCTGGCTTTGAGACCCCGATCACCGTTTACAACCCCGGTGGCATGGTCAAGACGATCCTCCACCACCATGACGCCCGTTACACGATTGACTTAATCGGTAACGCCACTTTCACCCACCAAATTGAAGTCCACGAGGCCGTCCTCCACGACGCCCAGGTCACCGATGCAGACGTCACCGTGACCGAAACCGGCGAGCAGGCCGCCTACTTAGACTTCGTCGCGAGCCTGCCCCAGGTCAGCGCCGTTAAAAGCAAGTAG

Protein sequence:

MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNNPAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDDFFPSVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFVSDEELAGPVLGELGQRLNGENPYFADGVNINFAHILGPNELFVRTYERGVGFTNACGTGMSATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNATFTHQIEVHEAVLHDAQVTDADVTVTETGEQAAYLDFVASLPQVSAVKSK

GenBank Info

locus_tag - FAM19471-i1-1.1_000820
EC_number - 5.1.1.7
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003684973.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - diaminopimelate epimerase
protein_id - extdb:FAM19471-i1-1.1_000820

Gene Locus

Located on scaffold FAM19471-i1-1_scf11

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_000819
FAM19471-i1-1.1_000821