update range to 10000 bp
locus tag: FAM19471-i1-1.1_000883 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R08549 2-oxoglutarate:NAD+ 2-oxidoreductase (CoA-succinylating); 2-Oxoglutarate dehydrogenase complex; 2-Oxoglutarate + CoA + NAD+ <=> Succinyl-CoA + CO2 + NADH + H+ kornec01100kornec01110kornec01120kornec01200
KEGG reaction
 R07618 enzyme N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase; Enzyme N6-(dihydrolipoyl)lysine + NAD+ <=> Enzyme N6-(lipoyl)lysine + NADH + H+ kornec00010kornec00020kornec00280kornec00620kornec00640kornec01100kornec01110kornec01240
KEGG reaction
 R03815 dihydrolipoylprotein:NAD+ oxidoreductase; Dihydrolipoylprotein + NAD+ <=> Lipoylprotein + NADH + H+ kornec00260
KEGG reaction
 R01698 Dihydrolipoamide:NAD+ oxidoreductase; Dihydrolipoamide + NAD+ <=> Lipoamide + NADH + H+
KEGG reaction
 R01221 glycine:NAD+ 2-oxidoreductase (tetrahydrofolate-methylene-adding); glycine cleavage system; Glycine + Tetrahydrofolate + NAD+ <=> 5,10-Methylenetetrahydrofolate + Ammonia + CO2 + NADH + H+ kornec00630kornec01100kornec01110kornec01200
KEGG reaction
 R00209 pyruvate:NAD+ 2-oxidoreductase (CoA-acetylating); pyruvate dehydrogenase complex; Pyruvate + CoA + NAD+ <=> Acetyl-CoA + CO2 + NADH + H+ kornec01100kornec01110kornec01120kornec01200
Ortholog
 N0.HOG0000527 dihydrolipoyl dehydrogenase
Gene Code
 lpdA
KEGG gene
 K00382 DLD, lpd, pdhD; dihydrolipoamide dehydrogenase [EC:1.8.1.4] kornec00010kornec00020kornec00260kornec00280kornec00310kornec00380kornec00620kornec00630kornec00640kornec01100kornec01110kornec01120kornec01200kornec01240
Eggnog Protein
 EP:pdhD
Eggnog Ortholog
 EO:COG1249
Eggnog Description
 ED:Dehydrogenase
EC Number
 EC:1.8.1.4 dihydrolipoyl dehydrogenase; LDP-Glc; LDP-Val; dehydrolipoate dehydrogenase; diaphorase; dihydrolipoamide dehydrogenase; dihydrolipoamide:NAD+ oxidoreductase; dihydrolipoic dehydrogenase; dihydrothioctic dehydrogenase; lipoamide dehydrogenase (NADH); lipoamide oxidoreductase (NADH); lipoamide reductase; lipoamide reductase (NADH); lipoate dehydrogenase; lipoic acid dehydrogenase; lipoyl dehydrogenase; protein-6-N-(dihydrolipoyl)lysine:NAD+ oxidoreductase kornec00010kornec00020kornec00260kornec00280kornec00310kornec00380kornec00620kornec00640kornec01100kornec01110kornec01120
Gene Product
 dihydrolipoyl dehydrogenase

Occurs in the following pathway maps:

Pathway Description
kornec00010 Glycolysis / Gluconeogenesis
kornec00020 Citrate cycle (TCA cycle)
kornec00260 Glycine, serine and threonine metabolism
kornec00280 Valine, leucine and isoleucine degradation
kornec00310 Lysine degradation
kornec00380 Tryptophan metabolism
kornec00620 Pyruvate metabolism
kornec00630 Glyoxylate and dicarboxylate metabolism
kornec00640 Propanoate metabolism
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01200 Carbon metabolism
kornec01240 Biosynthesis of cofactors

Sequences

Nucleotide sequence (GC-content: 51.3 %):

ATGGTTGTTGGTGATTACGCAATTGATTTAGACACGATTGTCATCGGTTCCGGCCCTGGTGGGTACGTGGCAGCCATCCACGCTGCTGAACTGGGCCAAAAGGTGGCCGTGATCGAAAAGGAAAACACTTTAGGTGGGGTCTGCTTAAACGTTGGTTGTATCCCGTCCAAGGCGCTGATCCAAGTTTCTGAAAACTACCGGACGGCCCTCGAAAACGAAGACGAAGGAATTTCCGCATCCGACGTTAAGTTAGACTGGGCTAAGGTACAAGAATTCCGTGCGGGCGTCGTTAACAAGATGACCAACGGGGTTTCCTACCTCTTCAAGAAGAACAAGATTGATGTGATTCACGGGGTGGCCTTCTTAAAGACCGACCACAGCTTACGGGTAATTGACGGCGAAAACGCCCAAACTTACACCTTCAAGCACCTGATTATCGCGACTGGTTCTCACCCAATTGAAATTCCTGGCTTCAAGTTTGGTGGCCGAGTGATCGATTCCACTGGGGTTCTGGAATTAAAGGAATTACCAAAGGAACTGGTTATCATCGGTGGGGGTTACATCGGTAGTGAATTAGCCGGCGCGTACGCTCGCTTCGGGACTCACGTTACGATCCTCGAAGGGACCGACTCAATCTTAAATGCCTACGAAAAGGACTTAGTTAAGATTACCGAAAAGAAGTTCAAGGAACTGGGTGTCACGGTCATTACTAAGGCCATGGCTAAGGAAGCTAAGGATACTGGTGACGCCGTTGAAGTCTCCTACGAACAAGACGGTAAGGTGAACACGATCAAGGCTGATTACGTTGCCGTAGCAGTTGGTCGGAAGCCAAACACCAAGGACATGGGTCTGGAACAAGTTGGGATTGAAACGACTGACCGCGGCCTGATCAAGGTTGACGCTCAAGGTCGGACCAACAAGGAAGATATCTTTGCCATTGGTGACATCGTTGCCGGGGCTGCCTTGGCACACAAGGCTTCCTACGAAGGTAAGATTGCTGCTGAAGCGATTGCCGGGCAATCCTCAGTGGTTGACTACCGGGCAATGCCAGCCGTATGTTACGTGGACCCTGAAATTGCGACGACCGGTTTAACGGCCGCTCAAGCAAAGGAACAAGGCTTAGACGTTAAGGCTTCCAAGTTCCCATTCTCCGCAAACGGGCGGGCAACTTCTAAGAAGGCAACTGATGGTTTCGTTCGCCTGGTTTCCTTAAAGGACAGCGGCGTAATTGTGGGTGCCCAAATTATTGGGGACAGTGCCTCCGACATGATCAGTGAATTGACGCTGGCCATCGAATCCGGGAGCACCGTGGAAGACATCGCTCTGACGATCCACCCACACCCATCCCTGTCTGAAGCCGTAATGGACGCAGCTGACGTGGCCCTTGGCTTCCCAACTAACATCTAA

Protein sequence:

MVVGDYAIDLDTIVIGSGPGGYVAAIHAAELGQKVAVIEKENTLGGVCLNVGCIPSKALIQVSENYRTALENEDEGISASDVKLDWAKVQEFRAGVVNKMTNGVSYLFKKNKIDVIHGVAFLKTDHSLRVIDGENAQTYTFKHLIIATGSHPIEIPGFKFGGRVIDSTGVLELKELPKELVIIGGGYIGSELAGAYARFGTHVTILEGTDSILNAYEKDLVKITEKKFKELGVTVITKAMAKEAKDTGDAVEVSYEQDGKVNTIKADYVAVAVGRKPNTKDMGLEQVGIETTDRGLIKVDAQGRTNKEDIFAIGDIVAGAALAHKASYEGKIAAEAIAGQSSVVDYRAMPAVCYVDPEIATTGLTAAQAKEQGLDVKASKFPFSANGRATSKKATDGFVRLVSLKDSGVIVGAQIIGDSASDMISELTLAIESGSTVEDIALTIHPHPSLSEAVMDAADVALGFPTNI

GenBank Info

gene - lpdA
locus_tag - FAM19471-i1-1.1_000883
EC_number - 1.8.1.4
inference - COORDINATES: similar to AA sequence:RefSeq:WP_010495698.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - dihydrolipoyl dehydrogenase
protein_id - extdb:FAM19471-i1-1.1_000883

Gene Locus

Located on scaffold FAM19471-i1-1_scf13

FAM19471-i1-1.1_000882
FAM19471-i1-1.1_000884