update range to 10000 bp
locus tag: FAM19471-i1-1.1_000906 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0003505 helicase-exonuclease AddAB subunit AddA
KEGG gene
 K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
Gene Product
 helicase-exonuclease AddAB subunit AddA
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004527 exonuclease activity
Gene Ontology
 GO:0004518 nuclease activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:addA
Eggnog Ortholog
 EO:COG1074
Eggnog Description
 ED:ATP-dependent helicase nuclease subunit A
EC Number
 EC:3.6.4.12 Transferred to 5.6.2.3 and 5.6.2.4
Gene Code
 addA

Sequences

Nucleotide sequence (GC-content: 59.3 %):

ATGGTTTTCACACCAAGTAAGGAACAGGAGCCGGCGATCAACGACCGGCAAAAAGACATTTTGGTTTCCGCCTCGGCGGGGAGTGGGAAGACCGCCGTTTTGGTTGAGCGGGTGATCCAGCTGATGGAAACCGGACTGAGTAAGGACGCTAAGCCTAGCGAGCGGCCCAACATCGATGACATCCTGATGGTGACCTTTACCACCGACGCCGCTAAGAACATGCGCGACCGGATCCGCCGGCGCCTGGTCGGGGCGACCGACGAACACATGAAGGCCCAGGTGGCCCGCTTGGCCCTGGCCAACATCAGCACGATCCACTCCTTTTGCGAGCAGTTGATTAAGCGCTACTACTACGTCATCGACCTCGACCCCCAGTTTCGGTTAATTGACGACGCCGAACAGCAGCTCCTAAAGGAACAGGCCTGGCAAGTGACCCTCGATGACTGGGTGGCCAATCCGGACCAAGTGGGGGCGCTGCACCAGTTAATCGATAACTTTGGGGCGGGGAACCTCGAGTCCGTTGTTCAGGCGCTGGACACCGAGGCCGACGCCCAGCCGCACCCGAGCGACTGGCTGGCCGGCTTAAGTGGCCTTTACCAGTTCGAAGAAGGGGCGGACCCGCGGCAAAGCGCCTTCTTTAAGCGCCTCTTGGAACCCCTCGTGGGCCCGCAACTAAAGGAACTGCGGGACCAGTGGGCGGCCCTTGGCGAAGTGGGGCCGGCCCGTTTTGCCAAGCAGGTTGAAGAAGATTTAGCTAAATTAGCCACGACCGTTGATGACCAGGGCCATTTGTTAGGCAGCTGGGACAGCCTGGCCCAGACCCTCAACAAGAAGAATTTTGCACCTAAGTTGCGCAAACGTAAGGATGACGACGATCCCGAACTCTTAGACGAACTGGGGGTTCAGCGGGGTGGCCTGCGGGATCAGCTGGGCGACCTCCACGATACCTACTTCTTCCAGTCCGCCGCGGACCTGGTTAAGTATGGTCAAAAGGCTGGCGCCCTAATTGAGATCTTAACCCGGGTGGCCACCGACTTCCGGTGCCACTACCAGATCATCAAGCAGGACCGCCGCCTGCTCGATTTCTCCGACTTAGAGCACTACGCCTACGCCATCTTGACCGGCGAAAACATCAACCCAAAGGTGACCTGGAGTGACGAAGAAGCGTGGGCCAAGCGCCAAGCCGCCGCCCAAGTCCAAGCCGAGTTGCAGCGCCACTACAAGGAAATCATGATCGACGAGTACCAAGACACCAACCGCCTGCAAGACGACCTGTTACGCCTCTTGCACAAGAGTGGGCAAAACCACCGCTTTATGGTTGGGGACATGAAGCAGTCGATCTACCGCTTCCGCCAGGCCGACCCCACCCTGTTTAAGGACTACTACGATCAGTTCAGCGCGGATGGGCAAAGAAGTGAGGCCCTGGACCTGAGCGACAATTACCGCTCCCGCCACGAGGTTACCGACCTGGTCAACCTCATTTTCGAACAGCTGATGGACCAGCAACTGGGTGAGATGGTCTACGATGATAAGGCCAGCTTGAAGCCCAAGGCCGATTGGGGGGCCGACCGGGACCAGGCTAGCCCGGCGACCCCGGAACTCCTGCTCTTTGATGGGGGCGTCAAGAAAACGACCGCTAACCCCACCGGCGAGGACGCCATCGTGGTCCGTCAGCCGGAAGACAAGGTCGCTAGCGAAGTCTGGCTGATTGGCCAACGGATCCGCGAGCTCCTGGCCAAGGAAACGATCTTGGACCCGGAAACCAAGCGGGTCCGCCCGATCACGCCGGGCGACATCGCCATTTTGTCGCGGGCCAAGCGGATTCACTCGGTGATCGCCGAACAGTTTGCCAAGCTTAACTTACCGGTGATGGTGCACGGGGTGGAAAACTACTTTAAGGCCACCGAGATCCGGGTCGTGATGTCCTTGCTAAAGGTAATCGATAACCCCTACCAAGACGTTCCGTTAGCGGCCGTGCTCCGTTCGCCGCTGATTCAAGTCGCTCCCGAGGTGGCGGCTAAGTTCGGCCTGAGCCAGGGCGAAAACCGGATCGGCTTTACGGAACCGGAGTTAGCCTACTTGAAGGTTAACAGCACCTCCAAGGACTTCTTTGGCGTCGTGCAGCAAAACTACTACGCTTGGCGCGATCAAGAGGTCGAAGCGGTTGAAAACCACGACGCCTTGACTGAAGAGGAGCTCGCCGAACGGGTCGCAGGCGACCCGGCCGGCTTAGCGACTAAGGAAGAACTGGGCGTCAACTGTGGGTTAATCTACCTGAAGTTAGCCCGCTTCTTTGAGTTGCGGGACCACTTACGCCGGGTCGCCCAGCGACGCCCCCTGGTGGACTTGATCTGGACGATTTACCAAGCAACCGGGTACCTGGATTACGTGGGCGGAATGAGCGGCGGCCCCCAGCGCCAAGCTAACCTCCACGCCCTGTACGAACGGGCGAGTGGCTACGAGGAGAGTGGCTTCAAGGGACTTTACCAGTTCATCCACTTCATCGAGCAGATGCAAAAGAAAAACGACGACTTGGGCGAGGCGACCACGGCCCTGGCCGGTGACGCGATTAACGTCATGACGATCCACAAGTCCAAGGGGCTCCAGTTCCCGATCGTCTTCTTAGTGGAAACGACCCACCAGTTCCAAGCCGACCGGGATCCGGTAACGATTGAGCCCCAGGCCGGTCTTGGCTTCACCTACGTGGATAGCACGGCCAACGAGACGATGCGCGTCAAGCACCCGCTGGTCCAACAGGCGGCCTTAAAGGAGAAAAAGAAGCGCCAGGACCGGGCCGAAGAAATGCGCCTCCTCTACGTGGCCCTGACCCGGGCCGAGCAGCGCCTCTTCATCACCGGGTACGTGAAGGACGCTGACCTGACCAAGAAGATGGATAAGTGGAACCGGGCCTTTGATAGCGCCAGCCCGCTGTTGACCACCACCACACGCTTGAAGGGGCAATCGATGCTTGATTGGATCATGATGACCCTGGTGCGGACGGCGAACTTCCCAACGCTAAGGGAGGGGGTTGAAGCCGCCGCCACCCCGCTGCGGGGCCTTACCAAGGCGGCCTACCAAATTAAGCTGCAAAACGCTGACCAGGTTCAGGCGGCCCTCAACACCCCGCTGGACCTGCACCCGAATGCGACGGCGGAGCAAGCCACCCCGGCGGCCGCCACTAGCCGCCAGTTTAAGGCCGACTTAGAACGGGTGTTAAACTTTACCTACCCGGATCAAGTGGCGACCCAAACGACCGCCTTTCAAGCCGTTTCGACGGTGCGGGAGGCCTTTGCCCGCCAGGACCCTACCAACCTGGAGATGGGTCGGCTAGAAATTGACCGCGACCAGATCAAAGAAGCCGGGGCCTACCTAGCACCGGAAGAGCGGGCCTTCGAAAATCCCGCCTTCATCACCGGGGCGAGCGATCAGGAGCCAACCGGGACGGCGATCGGGACCGCTACCCACTTGGTCTTCCAGAAATTACCGTTAACGGAACCGCTTGACGAAGGGGCGGTCCGTGCTTTAATTAAGTCCCTAACGGAGAGTGGTTTAATCGATAATCCCCAAGTTGCGGCGGGCATTGACGTGGCCGGCGTGGTATCCTTTTACCAAACGGGGCTCGGTCAGGTCATTACCGCCCACCCTGAGCAGGTTCACCGGGAAGTACCGTTCTCGATGTTACTGAGCGCCCACGATCTCTTCAGCGGGATTGGGGCCACCGATGACAGTGAGGTGTTGATCCACGGGATCATCGACGGCTACGTCCAACACGACGACCAGATCGACCTGTTCGATTACAAGACCGACCGGATCAGTCAGGCCCACCCGGAAGAAGACCTCCAGGAACTGGCGGACAAGTACTCGGGCCAACTGGTGCTGTACGCCGATGCCCTGACCAAGATGACGGGGGTTCCCCTAGAAAAGATCCACCGCCACCTTTACTTCACCCGGGCCAAGCGGGTGGTAACCCTGAGCGCCCCGCCGTCGTCGCACGAACCAAAGGAGGAAGCATAA

Protein sequence:

MVFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILMVTFTTDAAKNMRDRIRRRLVGATDEHMKAQVARLALANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTLDDWVANPDQVGALHQLIDNFGAGNLESVVQALDTEADAQPHPSDWLAGLSGLYQFEEGADPRQSAFFKRLLEPLVGPQLKELRDQWAALGEVGPARFAKQVEEDLAKLATTVDDQGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQSAADLVKYGQKAGALIEILTRVATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINPKVTWSDEEAWAKRQAAAQVQAELQRHYKEIMIDEYQDTNRLQDDLLRLLHKSGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSADGQRSEALDLSDNYRSRHEVTDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPELLLFDGGVKKTTANPTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIAILSRAKRIHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVLRSPLIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVEAVENHDALTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDLIWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKNDDLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVDSTANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKKMDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAATPLRGLTKAAYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQTTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKEAGAYLAPEERAFENPAFITGASDQEPTGTAIGTATHLVFQKLPLTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVAGVVSFYQTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQIDLFDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKRVVTLSAPPSSHEPKEEA

GenBank Info

gene - addA
locus_tag - FAM19471-i1-1.1_000906
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003685670.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - helicase-exonuclease AddAB subunit AddA
protein_id - extdb:FAM19471-i1-1.1_000906

Gene Locus

Located on scaffold FAM19471-i1-1_scf14

FAM19471-i1-1.1_000905
FAM19471-i1-1.1_000907