update range to 10000 bp
locus tag: FAM19471-i1-1.1_000921 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rlmH
Ortholog
 N0.HOG0003499 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
KEGG gene
 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Eggnog Protein
 EP:rlmH
Eggnog Ortholog
 EO:COG1576
Eggnog Description
 ED:Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
EC Number
 EC:2.1.1.177 23S rRNA (pseudouridine1915-N3)-methyltransferase; YbeA; RlmH; pseudouridine methyltransferase; m3Psi methyltransferase; Psi1915-specific methyltransferase; rRNA large subunit methyltransferase H
Gene Product
 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH

Sequences

Nucleotide sequence (GC-content: 52.9 %):

ATGAACATTAAGATTATCGGGGTCGGCAAGGTCAAGGAAAAGTACTTTAAGGCCGGGATCGCCGAGTACGCCAAGCGGATGGAGCGCTACGCCAAGTTTGAAATTGTCGAGGTACCAGACGAAAAGGCCCCCGAGACCCTCAGTCAGGCCGAAATGGACGCCGTGATGGCAAAGGAGGGTGAGCGGATCCTGGCGAAGATCAAGGACCGGGAATACGTTTATGCCCTGGCGATTAAGGGCAAGGAACGTTCCTCAGAGGAGTTCGCTAAGGAAATCAACCAGCTGGCCACTTATGGCCACTCCGATATAACCTTTGTGATCGGCGGTTCCTTGGGGCTTAGTCCGGCCGTTTTAAAACGGGCCAACACCCAGATTTCCTTTGGGCGTTTTACTTTGCCCCATAAGTTGATGCGCTTGGTCTTAGCCGAGCAAATCTACCGGGCCTTCACGATCATTAATGGCCTGCCCTACCATAAGTAG

Protein sequence:

MNIKIIGVGKVKEKYFKAGIAEYAKRMERYAKFEIVEVPDEKAPETLSQAEMDAVMAKEGERILAKIKDREYVYALAIKGKERSSEEFAKEINQLATYGHSDITFVIGGSLGLSPAVLKRANTQISFGRFTLPHKLMRLVLAEQIYRAFTIINGLPYHK

GenBank Info

gene - rlmH
locus_tag - FAM19471-i1-1.1_000921
EC_number - 2.1.1.177
inference - COORDINATES: similar to AA sequence:RefSeq:WP_011953354.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
protein_id - extdb:FAM19471-i1-1.1_000921

Gene Locus

Located on scaffold FAM19471-i1-1_scf14

FAM19471-i1-1.1_000920
FAM19471-i1-1.1_000922