update range to 10000 bp
locus tag: FAM19471-i1-1.1_001003 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rpiA
Gene Product
 ribose-5-phosphate isomerase RpiA
KEGG reaction
 R01056 D-ribose-5-phosphate aldose-ketose-isomerase; D-Ribose 5-phosphate <=> D-Ribulose 5-phosphate kornec00030kornec00710kornec01100kornec01110kornec01120kornec01200kornec01230
Ortholog
 N0.HOG0003299 ribose-5-phosphate isomerase RpiA
KEGG gene
 K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] kornec00030kornec00710kornec01100kornec01110kornec01120kornec01200kornec01230
Eggnog Protein
 EP:rpiA
Eggnog Ortholog
 EO:COG0120
Eggnog Description
 ED:Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
EC Number
 EC:5.3.1.6 ribose-5-phosphate isomerase; phosphopentosisomerase; phosphoriboisomerase; ribose phosphate isomerase; 5-phosphoribose isomerase; D-ribose 5-phosphate isomerase; D-ribose-5-phosphate ketol-isomerase kornec00030kornec00051kornec00710kornec01100kornec01110kornec01120

Occurs in the following pathway maps:

Pathway Description
kornec00030 Pentose phosphate pathway
kornec00051 Fructose and mannose metabolism
kornec00710 Carbon fixation in photosynthetic organisms
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01200 Carbon metabolism
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 49.0 %):

ATGGATCAAAATGAATTAAAAGCACTCGTTGGAAAAGAAGCCGTTAAGTACATTGAAGATGGTATGATCGTTGGGTTGGGGACCGGGTCAACCGTTCGCTTCATGGTGGATGCCCTAGGTGAACGAGTTAAAAACGAAGGTTTGAAGATCGTTGGGGTGACTACTTCACGTCGGACAACCAAGCAAGCAACTGAACTGGGGATCACGATCAAAGATATTGATGAAGTTGATCACGTTGACCTTACCATTGATGGTGCCGATGAAGTGAGCAACGATTTCCAAGGTATTAAGGGGGGCGGGGGCGCCCTGCTTTGGGAAAAGGTCGTTAACGATGCCTCAACCAAGAATATTTGGATTGTTGACGAATCAAAGTTAGTTGATAAGCTTGGCGACTTTGGGGTACCAGTAGAAGTAATCCCGTTTGGGGCGGCCCACGTTTTCCGCAAGTTTGAAAAGAAGGGCTACCAACCGCAGTGGCGGATGGACGGGGATGACCGTTACCTGACTGACGAAAAGAACTACATTATCGACCTCAAGATGGGGAAGATTGATGCCCCGAAGACCCTAGCTGAGGACCTTATTCACACCGTGGGCGTTGTTGAACACGGTCTCTTCTTGGATCGGGTCAACGAAGTAATCGTTGGTCGCCAAGACGGCCCGGAAGTTCTACACGCGCGATAA

Protein sequence:

MDQNELKALVGKEAVKYIEDGMIVGLGTGSTVRFMVDALGERVKNEGLKIVGVTTSRRTTKQATELGITIKDIDEVDHVDLTIDGADEVSNDFQGIKGGGGALLWEKVVNDASTKNIWIVDESKLVDKLGDFGVPVEVIPFGAAHVFRKFEKKGYQPQWRMDGDDRYLTDEKNYIIDLKMGKIDAPKTLAEDLIHTVGVVEHGLFLDRVNEVIVGRQDGPEVLHAR

GenBank Info

gene - rpiA
locus_tag - FAM19471-i1-1.1_001003
EC_number - 5.3.1.6
inference - COORDINATES: similar to AA sequence:RefSeq:WP_011667345.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribose-5-phosphate isomerase RpiA
protein_id - extdb:FAM19471-i1-1.1_001003

Gene Locus

Located on scaffold FAM19471-i1-1_scf16

FAM19471-i1-1.1_001002
FAM19471-i1-1.1_001004