update range to 10000 bp
locus tag: FAM19471-i1-1.1_001085 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0000759 DEAD/DEAH box helicase
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0070035 obsolete purine NTP-dependent helicase activity
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042623 -
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0017111 ribonucleoside triphosphate phosphatase activity
Gene Ontology
 GO:0016887 ATP hydrolysis activity
Gene Ontology
 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Gene Ontology
 GO:0016817 hydrolase activity, acting on acid anhydrides
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016462 pyrophosphatase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010501 RNA secondary structure unwinding
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008186 ATP-dependent activity, acting on RNA
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008026 -
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004386 helicase activity
Gene Ontology
 GO:0004004 -
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003724 RNA helicase activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:yfmL
Eggnog Ortholog
 EO:COG0513
Eggnog Description
 ED:DEAD DEAH box helicase
Gene Product
 DEAD/DEAH box helicase

Sequences

Nucleotide sequence (GC-content: 59.1 %):

TTGATTGAACAGTTTCAAACCCACTTTGAAGAACGCAACTTCAAACAACTGACCGCCATTCAAGAGGCGGTCCAAAAGCCCTTAGAAGAGGATAAGACCGTCTTTGGGATCGCCCCGACCGGCTCGGGGAAGACCCTGGCCTTCACCTGGCCGCTGTTACCCAAGGTGATGAAGGGGCAGGGGACCCAAATCCTGGTCCTCGAACCGTCACAGGAATTGGCCCTGCAAACCACCCGGGTGATGCGGGAATGGGCGGCCTTACTGGGGCTTAAGGTCCACTCCGCGACCGGGGGCGCTAACCTGCGCCGCCAAACGGAACGGTTGAAAAAGGAGCGCCCTGAAGTCGTCGTGGGGACGCCGGGGCGGATCCTTCACCTGCTAGACACCCGCGACCTCAAGTTAAACAACCTGGCCACGTTGGTGATCGACGAAGCTGACGACCTCTTGCGCGACGACACCCAAGCGGTGGTCGAAGACATTGAGCGGGCAACGCCACTAGACACCCAGTTGGCCTTTTTCTCCGCCACCCAATCAACGACCTTGGAACAGCTCGACGTCTTGTTTGGCCGCGACCTGGTCAAGATTGACGTGCGGGCCCAGGATCACTCCCGCGGCCCGGTTAAGCACGGGTTGGTGGTGGCCCGGACGATGAGTGACAAAGCGGTGATGCTGGAACGGCTCAGTCAAACCAAGAACTTCCGGGCGCTGGTCTTTTTCACTAGCATTAAGACTCTCCACTACACCGCCAGCCGCTTGCGCCACGACGGTATTTCATCAGCCACTTTGGGCGGGCGGCAGCGCCAAACCGAACGGGAAACGGTGATGCGCCAGTTCCGCAAACACCAAGTTAAGCTCTTGTTAACGACAGACGTGGCGGCCCGGGGCCTGGACATTCCTAAGCTCCCGGCGGTGGTTAACTTCGAGCTGCCGAACACGGCGGATGGCTACGTTCACCGGACGGGCCGGACCGGGCGCCAGGGGGAACCAGGCCTGGTGGTCAACCTTGGGGACGACCACGACTTCCGCGACCTCAAGAAGCTTTTGGCCGACACCGACTACCAGCTGGAGCCGATGACGATCGACAAGCGCCAGTTGGTTTCCGGCGAGGACGCTAAGAACGCGGGGAAGTCGGTTGAAAAGGCGACCGTCAAGGCGGTGCAAAAGCGTCAACACGACGCCAAGGGCAACCCGAAAAAAGAAGTGGTACGCACGCTAGATTCCTTCAGCCAGCCTGCCAAGGCCAAGCACAAAAAGAAGAACCGCAAGAACAAGGGGATTCGCTTGAAGCACCGGCGCAAAAACGAAGAGCAACAAAAGTAA

Protein sequence:

MIEQFQTHFEERNFKQLTAIQEAVQKPLEEDKTVFGIAPTGSGKTLAFTWPLLPKVMKGQGTQILVLEPSQELALQTTRVMREWAALLGLKVHSATGGANLRRQTERLKKERPEVVVGTPGRILHLLDTRDLKLNNLATLVIDEADDLLRDDTQAVVEDIERATPLDTQLAFFSATQSTTLEQLDVLFGRDLVKIDVRAQDHSRGPVKHGLVVARTMSDKAVMLERLSQTKNFRALVFFTSIKTLHYTASRLRHDGISSATLGGRQRQTERETVMRQFRKHQVKLLLTTDVAARGLDIPKLPAVVNFELPNTADGYVHRTGRTGRQGEPGLVVNLGDDHDFRDLKKLLADTDYQLEPMTIDKRQLVSGEDAKNAGKSVEKATVKAVQKRQHDAKGNPKKEVVRTLDSFSQPAKAKHKKKNRKNKGIRLKHRRKNEEQQK

GenBank Info

locus_tag - FAM19471-i1-1.1_001085
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015639334.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DEAD/DEAH box helicase
protein_id - extdb:FAM19471-i1-1.1_001085

Gene Locus

Located on scaffold FAM19471-i1-1_scf19

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
FAM19471-i1-1.1_001084
FAM19471-i1-1.1_001086