update range to 10000 bp
locus tag: FAM19471-i1-1.1_001140 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 uracil-DNA glycosylase
Ortholog
 N0.HOG0001472 uracil-DNA glycosylase
KEGG gene
 K03648 UNG, UDG; uracil-DNA glycosylase [EC:3.2.2.27] kornec03410kornec05340
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140097 catalytic activity, acting on DNA
Gene Ontology
 GO:0097510 base-excision repair, AP site formation via deaminated base removal
Gene Ontology
 GO:0097506 deaminated base DNA N-glycosylase activity
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0019104 DNA N-glycosylase activity
Gene Ontology
 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
Gene Ontology
 GO:0016798 hydrolase activity, acting on glycosyl bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006285 base-excision repair, AP site formation
Gene Ontology
 GO:0006284 base-excision repair
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004844 uracil DNA N-glycosylase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:ung
Eggnog Ortholog
 EO:COG0692
Eggnog Description
 ED:Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
EC Number
 EC:3.2.2.27 uracil-DNA glycosylase; UdgB (ambiguous); uracil-DNA N-glycosylase; UDG (ambiguous); uracil DNA glycohydrolase

Occurs in the following pathway maps:

Pathway Description
kornec03410 Base excision repair
kornec05340 Primary immunodeficiency

Sequences

Nucleotide sequence (GC-content: 55.7 %):

GTGAAACAGTTAATCAACAATGATTGGTGGCCGGTGTTAAAACCACAGTTTGAAACGGCCAACTACCAGCAATTGCATAATTTCTTGGTGGATGAATATGGCCACCAGCAGGTCTACCCCGAGATGCACCACATCTTTGAGGCCTTTAATTGGACCCCCTTTTCGAAGGTCAAAGTGGTTATTTTGGGGCAGGACCCGTATCACGGACCGGGGCAGGCCCACGGGTGTTCCTTTTCGGTTTTACCGGGAGTGGCTGTGCCACCGTCCTTGCAAAACATTTATAAGGAACTCCAAGCCGATTTGGGGTGCCCGCCCGTCAAGCATGGCTACCTCAGGTCCTGGGCCGAGCAGGGTGTTTTACTGCTAAACTCGGTTCTGACGGTGCGGGCTGGCCAGGCTTACTCCCACCAAGGGCACGGCTGGGAACAGCTAACCGACGCGGCGATCGTCGCCCTGTCTAAACGGCCGACCCCGGTGGTCTTCATCTTATGGGGGCGGGCGGCCCGGGATAAGAAGCGTTTGATTGACCTAAAGCGCAACTTTGTGGTGGAATCGGCGCACCCGAGTCCCCTGTCGGCTTACCGGGGCTTCTTTGGTTCGCGGCCGTTTTCAAAGACCAATCAGTTTTTGGAGATGACCGGCCAAGCCCCAATTAACTGGCAACTGCCGTCGACTGTCGACCACCTGTAG

Protein sequence:

MKQLINNDWWPVLKPQFETANYQQLHNFLVDEYGHQQVYPEMHHIFEAFNWTPFSKVKVVILGQDPYHGPGQAHGCSFSVLPGVAVPPSLQNIYKELQADLGCPPVKHGYLRSWAEQGVLLLNSVLTVRAGQAYSHQGHGWEQLTDAAIVALSKRPTPVVFILWGRAARDKKRLIDLKRNFVVESAHPSPLSAYRGFFGSRPFSKTNQFLEMTGQAPINWQLPSTVDHL

GenBank Info

locus_tag - FAM19471-i1-1.1_001140
EC_number - 3.2.2.27
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004563264.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - uracil-DNA glycosylase
protein_id - extdb:FAM19471-i1-1.1_001140

Gene Locus

Located on scaffold FAM19471-i1-1_scf20

FAM19471-i1-1.1_001139
FAM19471-i1-1.1_001141