locus tag:
FAM19471-i1-1.1_001143
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Code
|
rnr |
|
|
|
Gene Product
|
ribonuclease R |
|
|
|
Ortholog
|
N0.HOG0003491 |
ribonuclease R |
|
|
KEGG gene
|
K12573 |
rnr, vacB; ribonuclease R [EC:3.1.13.1] |
kornec03018 |
|
Eggnog Protein
|
EP:rnr |
|
|
|
Eggnog Ortholog
|
EO:COG0557 |
|
|
|
Eggnog Description
|
ED:3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec03018
|
RNA degradation |
Sequences
Nucleotide sequence (GC-content: 54.1 %):
ATGACAGATTTAAAGACACAAATACTAGACTACCTCACGGAAAACGCGGCCCTGAGTTTCTCGGCCGAAAAGTTGGCCCGGGTGCTTTCAATGACCAGTGCGGACGAATTCACCCCCCTGGTGCAGGCCCTCGTTCAATTAGAGCGGGAAGGAAAAGTGGAAGTGACGGATGATGGTGAATTTAAGCTGGTTCCCCAGGTAAAGGAATTCACTGGCGTTTTTCACCGTAACCCCAAGGGCTTTGGCTTTGTTTCCTATGACCCGGAAATGCCAGATATTTTCATTAACCCGGACCACACGATGTGCGCCCTAACCGGTGATGAAGTGGCCGTTAAGATCTTACAAGCGGGCGATCCAACCCGCGACCAGAGGCCGGAAGGGGAGATCACGAAGATCATTACCCGCTCCTACGACCACGTGGTGGGGGAATTTAAGAACATGACGATGGGCAACTTCATCGGTGAAGTGATTTTAAAGGATAAAAAGCTGGGGAGCCTCCGCTTTTACGTGACCGGCGATGGGATTCACCCGCAGGATAATGAAGTGGTCACCGCAAGCATTGCGACCTACCCAAGCGAAGACGCTCCGGAGGTGATGACTGGGCCGGCCCTGGAAGTGATCGGGGATAAGGATGAACCCGGCGTCGACATTCTTTCGGTGGTGTACGCCCACGACGTTCCCCACGAATTCCCAAAGGAAGTTTTGGACCAAGCCAACCAAATCCCGTTGACCGTCCAACCAGAAGAAAAGGTCGGGCGCCCGGATTTAACTGACCAGCCCTTGGTAACGATTGATTCAATTGAGTCTAAGGACTTAGACGACGCCGTGGTGGCTTGGAAGCTTGATAACGGCAACTACCACTTGGGGGTCCACATCGCCGACGTTTCCCACTACGTTCAACCGGGAACGCCACTGGACGAAGAGGCCTTCAAGCGGGGGACGTCGGTTTATTTGACCGACCGGGTAATTCCAATGTTGCCGCGGCGCCTTTCCAACGGGATTTGTTCCCTTAACCCGGGTGAAGAACGGTTAGCCATGTCGTGTGAAATGGAAATTGACCCCCAAGGAAACATCGTGAGCCACGAGATCTTCCCGTCGGTGATTCGTTCGCACGCCCGGATGACCTATAAGGGTGTCAACGCCATTTTAGAGGCCCACGATGAAAAGACCCGCCAGGAATATAAGGAACTGGTGCCGATGTTTGAAACGATGGCCGACTTGCACCGGATCTTGCTCAAGCACCGCCACCAACGGGGGGCAATTGACTTCGAAGCCCCGGAAGCGAAGATCATCGTCGACGAGAATGGTCACCCAACCGACATCCAATTACGCGACCGCGGGCTGTCGGAACGGATGATCGAATCCTTCATGCTGGCGGCTAACGAAACGGTGGCCAAGCACTACGATTTGATGCACGTACCATTCCTCTACCGGATCCACGAACACCCGGATACCGAACGGATTAAAAACTTTGCTGAATTCCTCTCCGTTTTCGGGATTAACATGCCGGGGGACCTCGCCAACGTTGAGCCAAAGATGTTGCAAAAGGTGCTTAAGCAAGTTGCCGGCACGCCAGAGGAACAAATGGTCCAAACGATGATGCTGCGCAGTATGCAACAGGCCAAGTACTCCGAAGATGAGCTAAGCCACTTTGGGCTGGGGGCCCAGTACTACACCCACTTTACGTCGCCGATTCGTCGTTACCCGGATACGACCGTTCACCGCTTGATCAAGTGGTACAAGGAAAACGGGACTACCGAAGAGGCCAAGGCCAAGTACCGGGATCGCCTAGCGGAAATTGCTGAACACACCTCAGTGACGGAACGGCGGGGGATTGATACCGAACGCGACGTCGATTCGATGAAAAAGGCTGAGTTTATGGAGGACCACGTGGGCGAGACCTTTGACGCCGTTGTCTCTTCCGTAATGAAGTTTGGCCTCTTCGTTGCCTTGGAGAATACGGTTGAAGGTTTGATTCATATCTCGGTGATGAACGATGACTACTACGAGTACATCGAAAAGCACATGGCCTTGGTCGGCCGGGACCACCACCACATCTTCCAGATTGGTCAACCAGTAAAGGTTAAGCTATTGCGGGTTGATAAGGATCAACGCGAAGTTGACTTCGAGCTGGTGAACGCCGATGAAGCGCCGCTGACTAAGCTGCGGGCACCACGGCAAAATGACCGCCGCAACGGTCGTGGTCGCGGCAACGGTAATGGACGGCGCAATAATAACGGGCGCCGTCACTTCTCCGATGACCACGATCGTGATAACGGGAGTCGTAACACCACCCAGATCAACCGGGGGCAAACTCGTCACCGTGGCGACCGGGATAATAATGGCGACCGCAATCGTCGCCGCAACGGTAACGGACAAAACCGCCGCCACTAG
Protein sequence:
MTDLKTQILDYLTENAALSFSAEKLARVLSMTSADEFTPLVQALVQLEREGKVEVTDDGEFKLVPQVKEFTGVFHRNPKGFGFVSYDPEMPDIFINPDHTMCALTGDEVAVKILQAGDPTRDQRPEGEITKIITRSYDHVVGEFKNMTMGNFIGEVILKDKKLGSLRFYVTGDGIHPQDNEVVTASIATYPSEDAPEVMTGPALEVIGDKDEPGVDILSVVYAHDVPHEFPKEVLDQANQIPLTVQPEEKVGRPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHARMTYKGVNAILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIVDENGHPTDIQLRDRGLSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERIKNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYSEDELSHFGLGAQYYTHFTSPIRRYPDTTVHRLIKWYKENGTTEEAKAKYRDRLAEIAEHTSVTERRGIDTERDVDSMKKAEFMEDHVGETFDAVVSSVMKFGLFVALENTVEGLIHISVMNDDYYEYIEKHMALVGRDHHHIFQIGQPVKVKLLRVDKDQREVDFELVNADEAPLTKLRAPRQNDRRNGRGRGNGNGRRNNNGRRHFSDDHDRDNGSRNTTQINRGQTRHRGDRDNNGDRNRRRNGNGQNRRH
GenBank Info
gene - rnr
locus_tag - FAM19471-i1-1.1_001143
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638655.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease R
protein_id - extdb:FAM19471-i1-1.1_001143
Gene Locus
Located on scaffold FAM19471-i1-1_scf20
FAM19471-i1-1.1_001142
