update range to 10000 bp
locus tag: FAM19471-i1-1.1_001152 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R02401 glutarate-semialdehyde:NAD+ oxidoreductase; 5-Oxopentanoate + NAD+ + H2O <=> Glutarate + NADH + H+ kornec00310kornec01100kornec01120
KEGG reaction
 R00714 succinate-semialdehyde:NADP+ oxidoreductase; Succinate semialdehyde + NADP+ + H2O <=> Succinate + NADPH + H+ kornec00250kornec00350kornec00650kornec00760kornec01100kornec01120
KEGG reaction
 R00713 succinate-semialdehyde:NAD+ oxidoreductase; Succinate semialdehyde + NAD+ + H2O <=> Succinate + NADH + H+ kornec00250kornec00350kornec00650kornec00760kornec01100kornec01120
Gene Product
 NAD-dependent succinate-semialdehyde dehydrogenase
Ortholog
 N0.HOG0000388 NAD-dependent succinate-semialdehyde dehydrogenase
KEGG gene
 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] kornec00250kornec00310kornec00350kornec00650kornec00760kornec01100kornec01120
Eggnog Protein
 EP:gabD
Eggnog Ortholog
 EO:COG1012
Eggnog Description
 ED:Belongs to the aldehyde dehydrogenase family
EC Number
 EC:1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+); succinic semialdehyde dehydrogenase (NADP+); succinyl semialdehyde dehydrogenase (NADP+); succinate semialdehyde:NADP+ oxidoreductase; NADP-dependent succinate-semialdehyde dehydrogenase; GabD kornec00250kornec00650kornec00760kornec01100
EC Number
 EC:1.2.1.20 glutarate-semialdehyde dehydrogenase; glutarate semialdehyde dehydrogenase; davD (gene name) kornec00310kornec01100kornec01120
EC Number
 EC:1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]; succinate semialdehyde dehydrogenase (nicotinamide adenine dinucleotide (phosphate)); succinate-semialdehyde dehydrogenase [NAD(P)] kornec00250kornec00350kornec00650kornec00760kornec01100kornec01120

Occurs in the following pathway maps:

Pathway Description
kornec00250 Alanine, aspartate and glutamate metabolism
kornec00310 Lysine degradation
kornec00350 Tyrosine metabolism
kornec00650 Butanoate metabolism
kornec00760 Nicotinate and nicotinamide metabolism
kornec01100 Metabolic pathways
kornec01120 Microbial metabolism in diverse environments

Sequences

Nucleotide sequence (GC-content: 52.3 %):

ATGGCATATCAAACTGTTAATCCTTATACCAATGAAGTTGAACACACTTACGCAGATACCACTCCAGAAGAAGTGGAGAAGGCGTTAAGCTTGGCGCACGGTCTGTACTTAAAGTGGCACGACGGCTCTGGTCTGGAAGAACGGAAAGCTGTGATTACAAAGCTGGGGACGCTCCTTCGCGAACGCCGCACGGAAATGGCTGAACTGATGACCCGTGACATGGGGAAGTTAATCGGTGAAGCCGAAGGTGAAGTTGACCTTTGTGCAAGCTTTTGTGACTACTACGTAGAACACGCCAACGAATTCCTGGCACCAAAGCCAATCTACACCACTTCCGGGAACGCCTTTATCTTAAAGCAATCCCTCGGGGTACTGATGGCGGTTGAACCATGGAACTTCCCGTTCTACCAAATCGCCCGGGTCTTTATCCCGAACTTCATCGTCGGGAACCCGATGCTGTTAAAGGACGCTGCTAACTGCCCAACCTCGGCCCAAGCCTTTGCTGACTTGGTACTGGAAGCCGGCGCCCCAGAAGGTTCTTTGACCAACCTCTTTGTTAGCTACGACCAAGTTTCCGAAATCATCGCTGACCCACGGGTTGCCGGGGCCTGCCTGACTGGTTCCGAACGTGGTGGTCGTTCCGTGGCCACGGAAGCCGCTAAGTCGCTGAAGAAGAGCACCCTGGAACTGGGTGGGAACGACGCCTTCGTTGTTTTGGAAGACGCCGACATGGACAAGCTGGCCGAAATCCTGCCGCAAACCCGTCTGTACAACGCTGGGCAAGTATGTACTTCCTCCAAGCGTTACATCGTTCCGGAAAAGCTGGTTCCGCAATTTGTGAACATCTTAAAGGACGGCTTCTCCAAGGTTAAGATGGGCGACCCGTTGGACCGCTCCACGACTTTGGCTCCGCTTTCCTCGAAGAAGGCCAAGGAAAAGCTGACCCAACAAGTTCAACTGGCTATCGACAACGGGGCTAAGCTCGAATACGGCTTTGAACCAGTGGAAGACCAAGAGGGTCAATTCTTCATGCCAACCATCCTGACCGGGGTAACGGTGGAAAACCCAATCTTTGACCAAGAAATGTTCGGCCCAGTCGCCGTTATCTACCCGTACAAGACCGAAGAAGAAGCCATTGAAATTGCTAACAACTCTAGCTACGGCCTTGGGAACACCGTCTTTGGTACCAACATTGCCCACGCCCGTGAAGTGGCTTCCAAGATCGAAGCCGGCATGAGCTGGATCAACGCTGGTTGGGCCTCCCTGCCTGAACTCCCATTCGGTGGGGTTAAGCACTCCGGTTACGGTCGTGAATTAAGTGAAATTGGTTTCAATGAATTCGTTAACCAACACCTGATTTACGAAGTAGAACCAACCGCTTAG

Protein sequence:

MAYQTVNPYTNEVEHTYADTTPEEVEKALSLAHGLYLKWHDGSGLEERKAVITKLGTLLRERRTEMAELMTRDMGKLIGEAEGEVDLCASFCDYYVEHANEFLAPKPIYTTSGNAFILKQSLGVLMAVEPWNFPFYQIARVFIPNFIVGNPMLLKDAANCPTSAQAFADLVLEAGAPEGSLTNLFVSYDQVSEIIADPRVAGACLTGSERGGRSVATEAAKSLKKSTLELGGNDAFVVLEDADMDKLAEILPQTRLYNAGQVCTSSKRYIVPEKLVPQFVNILKDGFSKVKMGDPLDRSTTLAPLSSKKAKEKLTQQVQLAIDNGAKLEYGFEPVEDQEGQFFMPTILTGVTVENPIFDQEMFGPVAVIYPYKTEEEAIEIANNSSYGLGNTVFGTNIAHAREVASKIEAGMSWINAGWASLPELPFGGVKHSGYGRELSEIGFNEFVNQHLIYEVEPTA

GenBank Info

locus_tag - FAM19471-i1-1.1_001152
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638431.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - NAD-dependent succinate-semialdehyde dehydrogenase
protein_id - extdb:FAM19471-i1-1.1_001152

Gene Locus

Located on scaffold FAM19471-i1-1_scf21

FAM19471-i1-1.1_001151
FAM19471-i1-1.1_001153