update range to 10000 bp
locus tag: FAM19471-i1-1.1_001154 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R00965 orotidine-5'-phosphate carboxy-lyase (UMP-forming); Orotidine 5'-phosphate <=> UMP + CO2 kornec00240kornec01100kornec01240
Gene Code
 pyrF
Gene Product
 orotidine-5'-phosphate decarboxylase
Ortholog
 N0.HOG0003351 orotidine-5'-phosphate decarboxylase
KEGG gene
 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] kornec00240kornec01100kornec01240
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901293 nucleoside phosphate biosynthetic process
Gene Ontology
 GO:1901137 carbohydrate derivative biosynthetic process
Gene Ontology
 GO:1901135 carbohydrate derivative metabolic process
Gene Ontology
 GO:0090407 organophosphate biosynthetic process
Gene Ontology
 GO:0072528 pyrimidine-containing compound biosynthetic process
Gene Ontology
 GO:0072527 pyrimidine-containing compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0055086 nucleobase-containing small molecule metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0046390 ribose phosphate biosynthetic process
Gene Ontology
 GO:0046112 nucleobase biosynthetic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0042802 identical protein binding
Gene Ontology
 GO:0034654 nucleobase-containing compound biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019856 pyrimidine nucleobase biosynthetic process
Gene Ontology
 GO:0019693 ribose phosphate metabolic process
Gene Ontology
 GO:0019637 organophosphate metabolic process
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0016831 carboxy-lyase activity
Gene Ontology
 GO:0016830 carbon-carbon lyase activity
Gene Ontology
 GO:0016829 lyase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009260 ribonucleotide biosynthetic process
Gene Ontology
 GO:0009259 ribonucleotide metabolic process
Gene Ontology
 GO:0009220 pyrimidine ribonucleotide biosynthetic process
Gene Ontology
 GO:0009218 pyrimidine ribonucleotide metabolic process
Gene Ontology
 GO:0009165 nucleotide biosynthetic process
Gene Ontology
 GO:0009117 nucleotide metabolic process
Gene Ontology
 GO:0009112 nucleobase metabolic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006796 phosphate-containing compound metabolic process
Gene Ontology
 GO:0006793 phosphorus metabolic process
Gene Ontology
 GO:0006753 nucleoside phosphate metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006221 pyrimidine nucleotide biosynthetic process
Gene Ontology
 GO:0006220 pyrimidine nucleotide metabolic process
Gene Ontology
 GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
Gene Ontology
 GO:0006206 pyrimidine nucleobase metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005515 protein binding
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0004590 orotidine-5'-phosphate decarboxylase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:pyrF
Eggnog Ortholog
 EO:COG0284
Eggnog Description
 ED:Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP)
EC Number
 EC:4.1.1.23 orotidine-5'-phosphate decarboxylase; orotidine-5'-monophosphate decarboxylase; orotodylate decarboxylase; orotidine phosphate decarboxylase; OMP decarboxylase; orotate monophosphate decarboxylase; orotidine monophosphate decarboxylase; orotidine phosphate decarboxylase; OMP-DC; orotate decarboxylase; orotidine 5'-phosphate decarboxylase; orotidylic decarboxylase; orotidylic acid decarboxylase; orotodylate decarboxylase; ODCase; orotic decarboxylase; orotidine-5'-phosphate carboxy-lyase kornec00240kornec01100

Occurs in the following pathway maps:

Pathway Description
kornec00240 Pyrimidine metabolism
kornec01100 Metabolic pathways
kornec01240 Biosynthesis of cofactors

Sequences

Nucleotide sequence (GC-content: 59.6 %):

ATGCAACGTTTTGAACCCATGGTCGCCGTCGACGTTGAGACCAAGCAAGAGGCCCTGCGCCTGTTTGACAAGTTATCTAGCGACACCGATCACCAACCAATCGTTAAAATCGGGATGGAACTGTACTACGCCTTTGGTCCCGGGATCGTCCGCGAAGCCAAGGGCCGGGGCTTGACCGTCTTTTTAGACCTGAAGCTTTACGACATCCCTAACACCGTGGAACGGACGATGCGGGTGCTCGGGGCCCTGGGCGCTAACTTTGTAACCACCCACGCCGCCGGGGGGACCGAAATGATGAAGGCTGCCAAGCGCGGGCTCTTGGCCGGGGCAGCGGCGGCGGGACGGCGCCAGCCTAAGCTGTTAGCCGTCACTAAGTTGACCTCGATTGACGAACAGATCCTCCACGACGAACAAAAGGTGGCCGGCACCCTGATTGAGGCGGTGCAAAACGCCGCCCACCTGACGGAGGCGGCCGGTTTGGACGGGGTGATTTGCTCGGCCCAAGAAGTCGAAGCGATCCGCCAGGTAACCGGGCCGGACTTCTTATGCGTTACGCCGGGGATCCGGTTGAACCTGGATAACAAGGACGACCAAAAGCGGGTGGTCACCCCCGCCCAGGCCCGGGAACTGGGGAGTAACGCGATTGTGGTCGGCCGGCCGATCACCTTAGCTAAGGACCCGATGAAGGCCTACAATGAAATTCGCCAAGACTTTATGGGGGAACAAGACTAA

Protein sequence:

MQRFEPMVAVDVETKQEALRLFDKLSSDTDHQPIVKIGMELYYAFGPGIVREAKGRGLTVFLDLKLYDIPNTVERTMRVLGALGANFVTTHAAGGTEMMKAAKRGLLAGAAAAGRRQPKLLAVTKLTSIDEQILHDEQKVAGTLIEAVQNAAHLTEAAGLDGVICSAQEVEAIRQVTGPDFLCVTPGIRLNLDNKDDQKRVVTPAQARELGSNAIVVGRPITLAKDPMKAYNEIRQDFMGEQD

GenBank Info

gene - pyrF
locus_tag - FAM19471-i1-1.1_001154
EC_number - 4.1.1.23
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003685689.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - orotidine-5'-phosphate decarboxylase
protein_id - extdb:FAM19471-i1-1.1_001154

Gene Locus

Located on scaffold FAM19471-i1-1_scf21

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_001153
FAM19471-i1-1.1_001155