update range to 10000 bp
locus tag: FAM19471-i1-1.1_001177 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 ribB
KEGG reaction
 R07281 D-ribulose 5-phosphate formate-lyase (L-3,4-dihydroxybutan-2-one 4-phosphate-forming); D-Ribulose 5-phosphate <=> L-3,4-Dihydroxybutan-2-one 4-phosphate + Formate kornec00740kornec01100kornec01110kornec01240
KEGG reaction
 R00425 GTP 7,8-8,9-dihydrolase (diphosphate-forming); GTP + 4 H2O <=> Formate + 2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + 2 Orthophosphate kornec00740kornec00790kornec01100kornec01110kornec01240
KEGG gene
 K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] kornec00740kornec00790kornec01100kornec01110kornec01240
Eggnog Protein
 EP:ribB
Eggnog Ortholog
 EO:COG0108
Eggnog Description
 ED:Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3
EC Number
 EC:4.1.99.12 3,4-dihydroxy-2-butanone-4-phosphate synthase; DHBP synthase; L-3,4-dihydroxybutan-2-one-4-phosphate synthase kornec00740kornec01100kornec01110
EC Number
 EC:3.5.4.25 GTP cyclohydrolase II; guanosine triphosphate cyclohydrolase II; GTP-8-formylhydrolase; ribA (gene name); GTP 7,8-8,9-dihydrolase (diphosphate-forming) kornec00740kornec00790kornec01100kornec01110
Gene Product
 3-4-dihydroxy-2-butanone-4-phosphate synthase

Occurs in the following pathway maps:

Pathway Description
kornec00740 Riboflavin metabolism
kornec00790 Folate biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01240 Biosynthesis of cofactors

Sequences

Nucleotide sequence (GC-content: 57.7 %):

ATGAAGTTTGATAGCGTTGAAACTGCGTTGACCCACTTGAAGAATGGCGGCTACATCATTGTTTCCGATAACGAAGACCGCGAAAACGAAGGGGACCTGGTGGCCCTAGCTGACCGGATCACCCCGGCGACGGTTTACGAGATGCTGGAAGAGGCCAAGGGCTTGATGTGTGTACCCCTGACCAAGGAACGGGCGGACCAACTGGGCTTCACCAAGATGGTGGCTCACAGCACCGACCCGAACGAAACGCCCTTCATGACGACCGTGGATGGGGCCTTCGAAGCAACCGGCGTCACGACCGGGGTGTCCGCCTTTGACCGGGCGGCCACCATTAACCACATCGCTAACGATGCTGCCAAGCCAACCGACTTTAACCACCCGGGTCACATCCAACCGCTGTACTCCCAAGACGGCGGCCTACGTAAGCGGATCGGCCACACCGAAGCCTCCGTTGACCTCGCCTTCTTGGCCGGGGCCAAGCCGGTAGCGGTGATCATTGAAGTGCTGAAGAGCGATGGTCACATGGCCCGGCGCGACGACCTCTTCCAGTTCGCCGACCGCTTAAACGTTCCCTACATCACGATCCAAGAAATTTTAAACTACATGGATCAACACGGGATTAAGGAAGCGCGCGACCTAACGGAGCCGGTACAAGCCTAA

Protein sequence:

MKFDSVETALTHLKNGGYIIVSDNEDRENEGDLVALADRITPATVYEMLEEAKGLMCVPLTKERADQLGFTKMVAHSTDPNETPFMTTVDGAFEATGVTTGVSAFDRAATINHIANDAAKPTDFNHPGHIQPLYSQDGGLRKRIGHTEASVDLAFLAGAKPVAVIIEVLKSDGHMARRDDLFQFADRLNVPYITIQEILNYMDQHGIKEARDLTEPVQA

GenBank Info

gene - ribB
locus_tag - FAM19471-i1-1.1_001177
EC_number - 4.1.99.12
inference - COORDINATES: similar to AA sequence:RefSeq:WP_007121827.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 3,4-dihydroxy-2-butanone-4-phosphate synthase
protein_id - extdb:FAM19471-i1-1.1_001177

Gene Locus

Located on scaffold FAM19471-i1-1_scf22

FAM19471-i1-1.1_001176
FAM19471-i1-1.1_001178