update range to 10000 bp
locus tag: FAM19471-i1-1.1_001258 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 type 2 isopentenyl-diphosphate Delta-isomerase
KEGG reaction
 R01123 isopentenyl-diphosphate Delta3-Delta2-isomerase; Isopentenyl diphosphate <=> Dimethylallyl diphosphate kornec00900kornec01100kornec01110
Ortholog
 N0.HOG0003374 type 2 isopentenyl-diphosphate Delta-isomerase
KEGG gene
 K01823 idi, IDI; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] kornec00900kornec01100kornec01110
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0044255 cellular lipid metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds
Gene Ontology
 GO:0016860 intramolecular oxidoreductase activity
Gene Ontology
 GO:0016853 isomerase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008610 lipid biosynthetic process
Gene Ontology
 GO:0008299 isoprenoid biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006720 isoprenoid metabolic process
Gene Ontology
 GO:0006629 lipid metabolic process
Gene Ontology
 GO:0004452 isopentenyl-diphosphate delta-isomerase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:fni
Eggnog Ortholog
 EO:COG1304
Eggnog Description
 ED:Involved in the biosynthesis of isoprenoids. Catalyzes the 1
EC Number
 EC:5.3.3.2 isopentenyl-diphosphate Delta-isomerase; isopentenylpyrophosphate Delta-isomerase; methylbutenylpyrophosphate isomerase; isopentenylpyrophosphate isomerase; isopentenyl-diphosphate Delta3-Delta2-isomerase kornec00900kornec01100kornec01110

Occurs in the following pathway maps:

Pathway Description
kornec00900 Terpenoid backbone biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites

Sequences

Nucleotide sequence (GC-content: 56.5 %):

ATGGAATCTGCTCACGCCCAACGTAAAAATGAACACCTTTCCCTCGCCGAAAAAGACTTTGCGCTCAATCACCAGGTTCACCCCTTTGATCAGGTGCGCTTAATACCGAATGCCCTCCCCGAAATGGCGGTTAAAGAAGTCAAGCTCAAGCCAGCGGGCTTGGCCCTGCCCTTTGAGTGGCCCTTTTACATTGAGGCCATGACCGGGGGGAGCCAACGGACCACCGCCGTCAACGCCTCCCTCGCCCGCTTAGCCAAGCAATTTAACTTGGCGATGGCTACCGGTTCGATGTCGGTGATGTTTAACGACGAGGCGGCCAAGGAATCATTTGCCGTCCTTCGCGAGGAAAACCCGGACGGCTTTTTAATGGCCAACCTGGGGGCGGGCGCCGATTTTAAAAAGGCCCGTCAAGTGATTAACTTCATTGACGCCGACGCCTTGGAGATCCACTTAAACCCCGCTCAAGAACTGATCATGAAGGAGGGCGACCGCGAATTTTACTGGTTGGAAGCATTGGCCGGCTTAGTTAGCCGCCTCCACATCCCGGTGATCGTCAAGGAAGTCGGCTTCGGCATGAGCCAACAAACCATCTCTCAATTAGAACAAATTGGCGTGCGGTGGATCAACGTGGCCGGCACCGGGGGAACCAACTTCGCCCGGATTGAGGACCGGCGTAACCACGAACTCGACCTGAGTGACCTGGTTAACTGGGGGCTGTCCACCCCCGAAAGCCTCCTGGAAGCCCAGCAAAAGTCGCCTTCCACCCACTTGATTGCTAGTGGTGGCATCACCTGCCCACTGGACGTAATCAAGGCCGGGGTACTGGGCGCCAAGGCGGTTGGGGTGGCTGGTTACTTCCTCCACCTCCTGATCAAAGAGGGCGAAGAAGGGTTAGCCAAGGAACTGCACCGCTGGCAAGTTGAACTACCCCGGTTAATGACCTTGGTGGGGGTCCGCAACTGGGATGACCTCTACCTAGTTGACTACCTGTTGAGCCCAGAACTGGAATCGTTCACCCGGCAACGCGGCTTAGTCAACCGACGGGGGATGGGGAATACCGCCCACCTCATTAACCCGCTTGGCTAA

Protein sequence:

MESAHAQRKNEHLSLAEKDFALNHQVHPFDQVRLIPNALPEMAVKEVKLKPAGLALPFEWPFYIEAMTGGSQRTTAVNASLARLAKQFNLAMATGSMSVMFNDEAAKESFAVLREENPDGFLMANLGAGADFKKARQVINFIDADALEIHLNPAQELIMKEGDREFYWLEALAGLVSRLHIPVIVKEVGFGMSQQTISQLEQIGVRWINVAGTGGTNFARIEDRRNHELDLSDLVNWGLSTPESLLEAQQKSPSTHLIASGGITCPLDVIKAGVLGAKAVGVAGYFLHLLIKEGEEGLAKELHRWQVELPRLMTLVGVRNWDDLYLVDYLLSPELESFTRQRGLVNRRGMGNTAHLINPLG

GenBank Info

locus_tag - FAM19471-i1-1.1_001258
EC_number - 5.3.3.2
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004563231.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - type 2 isopentenyl-diphosphate Delta-isomerase
protein_id - extdb:FAM19471-i1-1.1_001258

Gene Locus

Located on scaffold FAM19471-i1-1_scf24

FAM19471-i1-1.1_001257
FAM19471-i1-1.1_001259