locus tag:
FAM19471-i1-1.1_001279
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
| Type |
Name |
Description |
Pathways |
|
Ortholog
|
N0.HOG0003342 |
helix-turn-helix transcriptional regulator |
|
|
KEGG gene
|
K20480 |
nprR, nprA; HTH-type transcriptional regulator, quorum sensing regulator NprR |
kornec02024 |
|
Gene Product
|
helix-turn-helix transcriptional regulator |
|
|
|
Eggnog Ortholog
|
EO:COG1396 |
|
|
|
Eggnog Description
|
ED:Helix-turn-helix |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec02024
|
Quorum sensing |
Sequences
Nucleotide sequence (GC-content: 48.6 %):
ATGGACGTAGAATTATTTATCAAACGGCGTAAACAGCTTGGTTATTCCCAGGTGGCCCTTAGTAAGGGGATCTGTACCCAGTCGACTTTGAGTAAGTTCGAAAAGGACAGCCAGGTACCGTCGCTAGCGATCTTAACCCGGTTATGTAACCGGCTGGGGCTAACGATCGATGACCTGACCAGAAAAGACGCCTCTTCTGCCCGCTACATCCGCGACACTTTGGACCAAGTGGAGGAGGGGTTAATGATCGAGAACTTCCCTCAGGTGTCAGCGGGGCTTAACAAGCTTAAGATTGATCAGATCATGGCTAACAAAGAAAAGATGCGTTACTTCTACTTGGAGGGCTTTAACTACGTTTTAACTAACCAGGAGAGTAGCGAGATCCTATTCTCCTTCACCCAGATTCTCGATGAACTGGACGAACGACACCAAACGATTTATTCGTACTTGGCTTACCTCGGGTTGGGGATTTACTACACCCGTCACGACTCAATGGAACGGGCCAGCTTCTTCTTCACTAAGGTCACCAACTACTTGAAGACCCTAGTGAACCAAATGGAAGATACTGGCCCCCACGAAGATGACTTACGGGTACTGGCGATTACCTACTACCTAGCTGAATATCAAGCCCTGATTGGTAAACTCAAGGAAAGTAACCACTTGATTCACCAAGGGGTTAGCATCTGCGCACGTAAGCACGTTACGTACTTCTTGCCACGGCTAAAGGTGTTAGAGACTCAAAACGCCCTAGACCAAGGGGGCGACCCCCAAGAGATAGCGAACCTCTTGAATGATGCACTGGCCTTTGCCCGCCTGAACCGGAATAACGTGGTTCAGGTTCAAGTGGCTGCCCTAAAGAAAAACTACCGTAAGGTGTTAGCCAACTAA
Protein sequence:
MDVELFIKRRKQLGYSQVALSKGICTQSTLSKFEKDSQVPSLAILTRLCNRLGLTIDDLTRKDASSARYIRDTLDQVEEGLMIENFPQVSAGLNKLKIDQIMANKEKMRYFYLEGFNYVLTNQESSEILFSFTQILDELDERHQTIYSYLAYLGLGIYYTRHDSMERASFFFTKVTNYLKTLVNQMEDTGPHEDDLRVLAITYYLAEYQALIGKLKESNHLIHQGVSICARKHVTYFLPRLKVLETQNALDQGGDPQEIANLLNDALAFARLNRNNVVQVQVAALKKNYRKVLAN
GenBank Info
locus_tag - FAM19471-i1-1.1_001279
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015639107.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - helix-turn-helix transcriptional regulator
protein_id - extdb:FAM19471-i1-1.1_001279
Gene Locus
Located on scaffold FAM19471-i1-1_scf25
FAM19471-i1-1.1_001278
