update range to 10000 bp
locus tag: FAM19471-i1-1.1_001343 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R02806 Nucleoside:purine(pyrimidine) deoxy-D-ribosyltransferase; Thymidine + Base <=> Deoxynucleoside + Thymine kornec00240kornec01100
Gene Product
 nucleoside 2-deoxyribosyltransferase
Ortholog
 N0.HOG0003591 nucleoside 2-deoxyribosyltransferase
KEGG gene
 K08728 E2.4.2.6; nucleoside deoxyribosyltransferase [EC:2.4.2.6] kornec00240kornec01100
Eggnog Protein
 EP:yejD
Eggnog Ortholog
 EO:COG3613
Eggnog Description
 ED:nucleoside 2-deoxyribosyltransferase
EC Number
 EC:2.4.2.6 nucleoside deoxyribosyltransferase; purine(pyrimidine) nucleoside:purine(pyrimidine) deoxyribosyl transferase; deoxyribose transferase; nucleoside trans-N-deoxyribosylase; trans-deoxyribosylase; trans-N-deoxyribosylase; trans-N-glycosidase; nucleoside deoxyribosyltransferase I (purine nucleoside:purine deoxyribosyltransferase: strictly specific for transfer between purine bases); nucleoside deoxyribosyltransferase II [purine(pyrimidine) nucleoside:purine(pyrimidine) deoxyribosyltransferase] kornec00240kornec01100

Occurs in the following pathway maps:

Pathway Description
kornec00240 Pyrimidine metabolism
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 56.8 %):

ATGTACCAAAACAAAGTTTACCTCGCTAGCCCCTTCTTCTCCCCGGAGCAAAAGGAACGGATTGACATCGTAATGGCAGCCCTCAAGAAGAACCCAACCATCGATCCGGAGGGCATTTACAACCCCCAAGAACACCAAGCGGAGGGCTTAGAGTTTGGCTCCCGCGACTGGCAGGACACGGTCTTTGCCACCGACATGCGCCAGGTCAAGCGTGCCGACGTGGTGGTGGCCATCACCGACTACAAGTACGAAGAGGGCAACCCCGAACCAGACGCCGGCACCATCTTTGAGGTCGGGGCCGCTTGGGCTTGGAACATCCCGGTCGTCATGGCCCAGTTCCACCCCGATAACGAACTCAACTTGATGTTGGCCCGCTCCCACACCGCCATGTTTACCGGCGATCAGATTGAAGAGGGCCTAGCCACTTACGACTTCAACAACCTCCCGACCCACTGGACCGACATGAAGGTCTTTTAA

Protein sequence:

MYQNKVYLASPFFSPEQKERIDIVMAALKKNPTIDPEGIYNPQEHQAEGLEFGSRDWQDTVFATDMRQVKRADVVVAITDYKYEEGNPEPDAGTIFEVGAAWAWNIPVVMAQFHPDNELNLMLARSHTAMFTGDQIEEGLATYDFNNLPTHWTDMKVF

GenBank Info

locus_tag - FAM19471-i1-1.1_001343
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003682515.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - nucleoside 2-deoxyribosyltransferase
protein_id - extdb:FAM19471-i1-1.1_001343

Gene Locus

Located on scaffold FAM19471-i1-1_scf27

FAM19471-i1-1.1_001342
FAM19471-i1-1.1_001344