update range to 10000 bp
locus tag: FAM19471-i1-1.1_001425 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 ribD
KEGG reaction
 R03459 2,5-Diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine 2-aminohydrolase; 2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + H2O <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + Ammonia kornec00740kornec01100kornec01110kornec01240
KEGG reaction
 R03458 5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase; 5-Amino-6-(5'-phospho-D-ribitylamino)uracil + NADP+ <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + NADPH + H+ kornec00740kornec01100kornec01110kornec01240
Ortholog
 N0.HOG0001755 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
KEGG gene
 K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] kornec00740kornec01100kornec01110kornec01240kornec02024
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Eggnog Protein
 EP:ribD
Eggnog Ortholog
 EO:COG0117
Eggnog Description
 ED:Converts 2
EC Number
 EC:3.5.4.26 diaminohydroxyphosphoribosylaminopyrimidine deaminase kornec00740kornec01100kornec01110
EC Number
 EC:1.1.1.193 5-amino-6-(5-phosphoribosylamino)uracil reductase; aminodioxyphosphoribosylaminopyrimidine reductase kornec00740kornec01100kornec01110
Gene Product
 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD

Occurs in the following pathway maps:

Pathway Description
kornec00740 Riboflavin metabolism
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01240 Biosynthesis of cofactors
kornec02024 Quorum sensing

Sequences

Nucleotide sequence (GC-content: 62.0 %):

TTGAGTTCAGACGAACAGTTCATGCAACTGGCGCTCGCTGAAGCGGCCAAGGGCGGGAGCGCCACCTGGAAGAACCCCCAGGTCGGCGCCGTGATAGTCAAAGACGGCCAGCTGCTGGCGACGGGCTACCACCACCAGTATGGTCAGGCCCACGCCGAGCGCGACGCCATCAGTAAGCTTTCTAACGAACAGCTGGCCGGGGCCACGATTTACGTCACCCTGGAGCCCTGCTTTCACTACGGCAAGCAGCCTCCGTGTAGCCAGTTGTTAATTGACAGCCACTTTGCCCGGGTGGTCGTCGCCACGATTGACCCCCACCAAGTCGTTGGTGGCAAGGGAATCGCCCAGCTAAAGGCGGCCGGAATTGATGTGGAGGTCGGGCTCTTAAAGGACCAAGCCGAGGCCCTCAACCGCCACTACTTCTACTTTTACCGCCAGCAGCGGCCCTGGATCACGGCCAAGCAGGCCCTCTCCTTGGATGGCCAGGTTGCAGCCGCCCCGGGGCAAGCGACGGCGATCACTAACCAGGCCGCCCGCCGGCTGGTCCACCAGGAACGCGCTGACTACCACGCGATCGTGGTCGGCGCCGGCACCGTGCTTGTCGACGACCCACGCCTGCTGTGCGAGACGCCGCAACTCTTCCCCCCGGTCCGGGTAATCTTGGACCGGGCGGGGCGCCTGCTCGATTACCAGGACCGCTTTGTCTTCACCGATGCTTCCGCCCCAACCTGGTTAGTCACCACCAACCGGGCCGCCACGAAAGTCGACTGGCCCGCTCACGTGACCGTTAAACTGTTGCAAAACGGCGACTGGCCGGAGTTACTTGACTACTTTAAAGAAGCCGAGTTGCAAAGCCTCTACGTGGAGGGCGGTCCCGCGGTTTTGACCGAACTATTTCAAGCGGTCCCGGTCAACCAGTTAATCACCTACCTGGACCCCCAAATCATCGGCGACCAAGGCCTGGCCGGGGCCCAGTTCCCGGCCGGCACCGCTTTTACCCACCGCACCGTCACCCAACTCGGTGATGACATCCGGATTGACGAAAGGAATGACGAGTAA

Protein sequence:

MSSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLSNEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAGIDVEVGLLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGQVAAAPGQATAITNQAARRLVHQERADYHAIVVGAGTVLVDDPRLLCETPQLFPPVRVILDRAGRLLDYQDRFVFTDASAPTWLVTTNRAATKVDWPAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTELFQAVPVNQLITYLDPQIIGDQGLAGAQFPAGTAFTHRTVTQLGDDIRIDERNDE

GenBank Info

gene - ribD
locus_tag - FAM19471-i1-1.1_001425
EC_number - 1.1.1.193 --AND-- 3.5.4.26
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391130.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
protein_id - extdb:FAM19471-i1-1.1_001425

Gene Locus

Located on scaffold FAM19471-i1-1_scf30

FAM19471-i1-1.1_001424
FAM19471-i1-1.1_001426