update range to 10000 bp
locus tag: FAM19471-i1-1.1_001449 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rfbD
KEGG reaction
 R02777 dTDP-beta-L-rhamnose:NADP+ 4-oxidoreductase; dTDP-6-deoxy-L-mannose:NADP+ 4-oxidoreductase; dTDP-L-rhamnose + NADP+ <=> dTDP-4-dehydro-beta-L-rhamnose + NADPH + H+ kornec00521kornec00523kornec00541kornec01100kornec01110
Ortholog
 N0.HOG0001178 dTDP-4-dehydrorhamnose reductase
KEGG gene
 K00067 rfbD, rmlD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] kornec00521kornec00523kornec00541kornec01100kornec01110
Eggnog Protein
 EP:rfbD
Eggnog Ortholog
 EO:COG1091
Eggnog Description
 ED:Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose
EC Number
 EC:1.1.1.133 dTDP-4-dehydrorhamnose reductase; dTDP-4-keto-L-rhamnose reductase; dTDP-4-ketorhamnose reductase; TDP-4-keto-rhamnose reductase; thymidine diphospho-4-ketorhamnose reductase; dTDP-6-deoxy-L-mannose:NADP+ 4-oxidoreductase; dTDP-6-deoxy-beta-L-mannose:NADP+ 4-oxidoreductase kornec00521kornec00523kornec00541kornec01100kornec01110
Gene Product
 dTDP-4-dehydrorhamnose reductase

Occurs in the following pathway maps:

Pathway Description
kornec00521 Streptomycin biosynthesis
kornec00523 Polyketide sugar unit biosynthesis
kornec00541 O-Antigen nucleotide sugar biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites

Sequences

Nucleotide sequence (GC-content: 46.9 %):

ATGACGGAAATCTTAATTACCGGGGCAACCGGTCAACTCGGCTCGGAATTGCGGAACTTACTTGATGAACGTAACGTTGCCTACGATGCCTTTGATTCCCATGGGTTGGACATTACCGATGAAGAAACGGTGATGAAAAAGGTTGAAGAGTTACAGCCAAAGGTCATTTACCACTGTGCAGCATACACGGCCGTTGATAACGCCGAAGACCAATACAAGGCAGCTAACTGGCAGGTAAATGAAACGGGGACCCAAAATATTGCTCAAGCAGCGAAGAAAGTGGGGGCGCTCCTCGTTTACGTAAGCACCGACTATGTCTTTGACGGGACAAACCCTGGTGAATATAAGGAAGACGACCCAACTAACCCAAAGAATGAATACGGGAAGGCTAAGTTAGCCGGAGAAGAGATCGTTAAGCAAACTCTGGATAATTACTACATCGTTCGGACGTCATGGGTCTTTGGAAAGTACGGGCGTAACTTTGTTTACACGATGCTCCGCTTGGCTAAGGATCACGATCGTCTAACGGTGGTCAACGATCAATTTGGACGTCCAACTTGGACCCGGACTCTAGCTGAATTTATAACCCACTTAGTCGATACTAAGAGCCCATACGGAACCTACCAATTATCCAACGACGATAGTTGCTCCTGGTACGAATTTGCCAAGGAAATTCTGGCAGATAAGGACGTTGAAGTTGCTCCTGTTACGTCTAAAGAATACCCGCAAAAGGCCTACCGTCCTCGCCACTCCATCATGAGTTTGGAAAAGGCTAAGGAAACGGGTTACGAGATTCCAACGTGGCAAGAAGCATTGAAGGAATTCATGAGCGACATGGATGAGAGTTTCTTGAATTAG

Protein sequence:

MTEILITGATGQLGSELRNLLDERNVAYDAFDSHGLDITDEETVMKKVEELQPKVIYHCAAYTAVDNAEDQYKAANWQVNETGTQNIAQAAKKVGALLVYVSTDYVFDGTNPGEYKEDDPTNPKNEYGKAKLAGEEIVKQTLDNYYIVRTSWVFGKYGRNFVYTMLRLAKDHDRLTVVNDQFGRPTWTRTLAEFITHLVDTKSPYGTYQLSNDDSCSWYEFAKEILADKDVEVAPVTSKEYPQKAYRPRHSIMSLEKAKETGYEIPTWQEALKEFMSDMDESFLN

GenBank Info

gene - rfbD
locus_tag - FAM19471-i1-1.1_001449
EC_number - 1.1.1.133
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012390726.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - dTDP-4-dehydrorhamnose reductase
protein_id - extdb:FAM19471-i1-1.1_001449

Gene Locus

Located on scaffold FAM19471-i1-1_scf31

FAM19471-i1-1.1_001448
FAM19471-i1-1.1_001450