update range to 10000 bp
locus tag: FAM19471-i1-1.1_001451 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rfbC
KEGG reaction
 R06514 dTDP-4-dehydro-6-deoxy-alpha-D-glucose 3,5-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3,5-epimerase; dTDP-4-oxo-6-deoxy-D-glucose <=> dTDP-4-dehydro-beta-L-rhamnose kornec00521kornec00523kornec00541kornec01100kornec01110
Ortholog
 N0.HOG0004716 dTDP-4-dehydrorhamnose 3,5-epimerase
KEGG gene
 K01790 rfbC, rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] kornec00521kornec00523kornec00541kornec01100kornec01110
Eggnog Protein
 EP:rfbC
Eggnog Ortholog
 EO:COG1898
Eggnog Description
 ED:Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose
EC Number
 EC:5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-L-rhamnose synthetase; dTDP-L-rhamnose synthase; thymidine diphospho-4-ketorhamnose 3,5-epimerase; TDP-4-ketorhamnose 3,5-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3,5-epimerase; TDP-4-keto-L-rhamnose-3,5-epimerase kornec00521kornec00523kornec00541kornec01100kornec01110
Gene Product
 dTDP-4-dehydrorhamnose 3-5-epimerase

Occurs in the following pathway maps:

Pathway Description
kornec00521 Streptomycin biosynthesis
kornec00523 Polyketide sugar unit biosynthesis
kornec00541 O-Antigen nucleotide sugar biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites

Sequences

Nucleotide sequence (GC-content: 42.8 %):

ATGGGAAAATTAAACGTTCAAACAACCAAACTACAAGACGTCAAAATTATTATACCGGCCGTCTTTGGTGATCACCGGGGTTTCTTTGAAGAAACTTACTCTGATCGTGACTTCAAGGCAGCTGGAATTGACTTTAACTTTATTCAAGATAACCAATCACTTTCAACGCAGGCAGGTGTTCTGCGTGGACTACACTTTCAACGGGGGAAAGCAGCGCAAACAAAGTTAATCCGGGTCGTTACCGGTGCCGTCCTGGATGTGATTGTTGACTTACGGAAGGGTTCCCCAACATACAAGCAATGGGAAGGTTACATCTTATCAGCAAGTAACCACCGTCAACTCCTAGTTCCCCGGGGATTTGCCCATGGCTTCTTGACCCTAACTGATAACGTTAACTTTGTTTACAAGTGCGATAACTATTACGATGCAGAAGCTGATGGGGGAATTTCCTTTAAGACGCCGGAATTAAACATTGACTGGCCAATTGAATTTGATAAGGCCATTACTTCCGAAAAGGATGCTGCACAACCAACCTTAACTGAATTCGAAAAAGACAACCCATTTGTTTATGGTGAAATTTAA

Protein sequence:

MGKLNVQTTKLQDVKIIIPAVFGDHRGFFEETYSDRDFKAAGIDFNFIQDNQSLSTQAGVLRGLHFQRGKAAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTDNVNFVYKCDNYYDAEADGGISFKTPELNIDWPIEFDKAITSEKDAAQPTLTEFEKDNPFVYGEI

GenBank Info

gene - rfbC
locus_tag - FAM19471-i1-1.1_001451
EC_number - 5.1.3.13
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002831250.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - dTDP-4-dehydrorhamnose 3,5-epimerase
protein_id - extdb:FAM19471-i1-1.1_001451

Gene Locus

Located on scaffold FAM19471-i1-1_scf31

FAM19471-i1-1.1_001450
FAM19471-i1-1.1_001452