update range to 10000 bp
locus tag: FAM19471-i1-1.1_001492 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 recF
Ortholog
 N0.HOG0001433 DNA replication/repair protein RecF
KEGG gene
 K03629 recF; DNA replication and repair protein RecF kornec03440
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071897 DNA biosynthetic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043590 bacterial nucleoid
Gene Ontology
 GO:0043232 intracellular non-membrane-bounded organelle
Gene Ontology
 GO:0043229 intracellular organelle
Gene Ontology
 GO:0043228 non-membrane-bounded organelle
Gene Ontology
 GO:0043226 organelle
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034654 nucleobase-containing compound biosynthetic process
Gene Ontology
 GO:0034645 cellular macromolecule biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009295 nucleoid
Gene Ontology
 GO:0009059 macromolecule biosynthetic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006302 double-strand break repair
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0000731 DNA synthesis involved in DNA repair
Eggnog Protein
 EP:recF
Eggnog Ortholog
 EO:COG1195
Eggnog Description
 ED:it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded
Gene Product
 DNA replication/repair protein RecF

Occurs in the following pathway maps:

Pathway Description
kornec03440 Homologous recombination

Sequences

Nucleotide sequence (GC-content: 53.5 %):

ATGATTCTCCAGGAGCTTCAGTTAAGTCATTACCGTAACTATGAGGAACTGGCGGTGACCTTTGCGCCGGGGATCAACGTCTTAATTGGAGAAAACGCCCAGGGGAAAACCAACCTGCTGGAGGCCATCTACCTGTTGGCCTTCACCAAGAGTCACCGGACGGCCAAGGACCGGGAGTTAATTGGCTGGCACCAAAAGCTGGCCCGGGTTAGCGGCGTGGTTGAGCGAGCGAGCGGCCGCCTTCCCTTAGAGGTGCAAATTTCCACCAGTGGCAAGCGGGTAAAGGTCAACCACCTCTTTCAAAAGCGGCTTTCCACTTACGTTGGGAACCTCAACGTAGTTTTGTTTGCCCCCGAAGACCTTGCCCTAGTTAAGGGGGCACCGGTGAACCGGCGCCAGTTTATGGACATGGAATTTGGCCAGATGAGTAGCAAGTACTTGTACAACGTCAGCCGCTTCAACCAGCAGCTCGCCCAACGTAACGCCTACTTGCGCCAGTTCAAGTATGGCCAACAAAGTGATCGGATTTTACTCGGGGTGATCACGGATCAACTCGCTTCGGTGGGGGGCGATGTAGTGGTGGCTCGCCAACAGTTAGTCAAGCGGTTGGGAAAGTGGGCGGCTGAATTACACCACCACATTTCCAAGCAAAAAGAAGAGCTGAGCTTACAGTACGTTAGCCAAGTTGAAGTGGACGATCAAACGACCGAAGAGGAAGCGGTCGCCCAACTGCGCCGCCTCTATTCAGAAAACGAGGAGCGAGAAATCGAGCACGGGACCAGCCTGATTGGCCCGCAGCGCGATGACATCCACTTCATCGTCAACGGTCAAAACGTGCAACGCTTCGGTTCCCAAGGCCAACAGCGGACCACCGCTTTGGCCGTTAAATTAGCCGAGATTGACCTGATGAAAGAGCAGACCGGTGAATACCCCCTGCTCTTGTTAGACGACGTCTTGTCCGAGTTAGATGACGACCGGCAAACCCACTTACTGACGGCGATTCAAGATAAGGTGCAAACCTTTATCACCACTACTAGTTTGAGTGGGGTGGCTCGGCAACTAATTCACCACCCAACCATCTTCACGATTCAAAGTGGCACACTCACAAAGGAGGAAGACTAG

Protein sequence:

MILQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAKDRELIGWHQKLARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVLFAPEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDRILLGVITDQLASVGGDVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQTTEEEAVAQLRRLYSENEEREIEHGTSLIGPQRDDIHFIVNGQNVQRFGSQGQQRTTALAVKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQDKVQTFITTTSLSGVARQLIHHPTIFTIQSGTLTKEED

GenBank Info

gene - recF
locus_tag - FAM19471-i1-1.1_001492
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638406.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DNA replication/repair protein RecF
protein_id - extdb:FAM19471-i1-1.1_001492

Gene Locus

Located on scaffold FAM19471-i1-1_scf33

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0187: GO:0009295 nucleoid
FAM19471-i1-1.1_001491
FAM19471-i1-1.1_001493