OpenGenomeBrowser
Tools
TAXID 1613
ORGANISM FAM19471
GENOME FAM19471-i1-1.1
GENE FAM19471-i1-1.1_001519
locus tag:
FAM19471-i1-1.1_001519
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
Type
Name
Description
Pathways
Gene Product
transcription-repair coupling factor
Ortholog
N0.HOG0001272 transcription-repair coupling factor
Gene Code
mfd
KEGG gene
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
kornec03420
Eggnog Protein
EP:mfd
Eggnog Ortholog
EO:COG1197
Eggnog Description
ED:Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA
Occurs in the following pathway maps:
Pathway
Description
kornec03420
Nucleotide excision repair
Sequences
Nucleotide sequence (GC-content: 55.6 %):
G T G A A G T T A A C G G A G T T G G C C A A G C A A C A G C C A G C C T T T T C A A A A A T T A A G G A G G T C A T T G A T A G T G G C C A G C G C C A G T T G A T T A C C G G G G T T T C C G G G T C G G C T A A A A C G C T C C T G T T G G C G G C G C T G C A A G G G G A G T T G T C A C A C C C G C A G T T A G T G G T G T G C G A C A G T C T T T A C C A C A T G C A A G A G C T G G T C G C C G A C C T T G A A A A C C T G C T T G G T G A G G A C C A G G T C T T T G C C T T T C C G G T C G A A G A G G T G T T G G C A A C C G A A G T G G C G A C C G C T T C A C C T G A C T A C C G C T T G C A A C G G G T T C A G G C C C T C A A T A C C C T T T T G G C A G A C C A A G C G G C C G T C G T T G T G A C G G A T G C G G C G G G T C T G C G C C G G C G C C T G C C C A A A C C G G G G G A T T T C C A A G C C G C C A C C C T G A C G G T C G A A G T C G G G G G T G A A C T T G A T C C A A C T A C G G T G G G G A C C C A G T T G A T G G C G A T G G G C T A T C A G C G C C A A A A G A T G G T C T T A A A A C C C G G G G A C T T T G C C A T G C G G G G G T C G A T T G T C G A C A T T T A C G C C C T G A A C A C G G C C C A C C C G G T G C G G A T C G A C C T C T T T G A C A C C G A G G T G G A T T C C C T A C G C T A C T T T G A C G C C G A A A G C C A G C G G A G C G T T G A A A A C A T C C G G G C G G T G A C G A T C T T G C C C G C T A C C G A T T T C A T C G C C C C A C C C G C C A A G T T A G C C C A G C T A A A G G G G G A G C T G C A A G A C G A T T A C C A C C A C T T A G C T C A A A C G G C G G A T G A A G A G G A A C G C C A G G C C C T G T T T G G C C T C T T T G A C C C G G T C A T C T C C G C T T T G G A C G C G G G G C A G T T A C C A G T G G A A A T G C T G G A G T A C G C C G A C C G G G T G T A C G A A C A G C C G G C C T C C T T G C T C G A C T A C C T A C C C G C G A A A A G C A A C C T G G T C T T A G A C G A C T G G G G G C G G A T T A A G G A G G G A G C C A A G C G A A T T A C G G A G C A A G A A A C T G C C T G G T T G A T G G A T A A G G T G G C C G C T A A A C A C C G G G T C A G G G G C G C C A C C C T T G A T A A C G G G G T G A T G G A A A C C C T A C C C A A G C G A C C G G G C C C C C A G A C C T A C C T A G C C C T C T T T C A A A A G G G G C T T G G A C A A G T C A A A C T G G C G C A G A T C T C T G A C T T A G C A A C G C G G G A G A T G C A G C G C T T C T T T T C C C A A T T G G A C C T T T T A A A G G G T G A G C T C A A G C G C T G G C A G T C C C A G G G G G C A A C G G T T G T G A T C A T G G C C A A C A G C C C G G A A C G T C G A A A C C A A G T C G C C A C T A C C C T A G C A G A C T T T G G G G T G G C G G T T G T T C A A A C G G C G C C C G A C C A G C T A A T G G A A C A C C A G G T C C A G C T G G T G G C G G C C A C C T T A G C T A A C G G A T T T G A A A T G C C C C C G G C C A A C T T G G T G G T G A T T A C C G A G G C G G A A A T G T T C A A A C A G G T T A A G A A C C G C C G T C C A C G G G C C C A G A A G T T A G C G A A T G C C G A G C G G A T C A A G T C C T A C A C C G A C T T A A A G C C G G G C G A T T A C G T G G T C C A C G T G A A C C A C G G G A T T G G C C T G T T T G C C G G G A T T A A G A C G A T G G A A G T C G A T G G C G T T C A C C A G G A T T A C A T G G T G T T A G A T T A C C G C G A C A A C G C C C A G A T C T T C G T G C C A G T T A C C C A G T T A A A C C T G G T T C A A A A G T A C G T T T C G G C T G A A T C A A A G A C G C C C C G C T T A A A C C G C T T A G G G G G C G T T G A G T G G G C C A A A A C C A A G C G G C G G G T G G C G G C C A A A A T T G A A G A C A T T G C C G A C G A C T T G G T C G A C C T T T A C G C C A A G C G C G A G A C C G A A A A G G G C T T T G C C T T T C C C A A G G A T G A C T A C T T G C A A G A G A A G T T T G A C G A T G A A T T C C C G T A C G C C G A A A C T A A A G A C C A A C T A C A A A G C A T C C A G G A A A T T A A G G C T G A C A T G G A A C G C C C G C G G C C A A T G G A C C G G C T C T T A G T C G G T G A C G T T G G T T A C G G C A A G A C C G A G G T C G C C C T G C G T G C C A T C T T C A A G G C C G T T G C C G G G G G C A A G C A G G T C G C C T T T T T G G T C C C C A C C A C C A T C T T A G C T C A G C A G C A C T A C G A C A C G A T G A A G G C C C G C T T T G A A G G C T T T C C G G T C A C A A T T G C C C T G A T G T C A C G C T T T A A G A C C G C C A A G G A A T T A A A G G A G A C C G A C C G G G G G C T T T T G A A C G G C G A A A T T G A T A T C G T G G T G G G G A C C C A C C G G A T C T T A T C T A A A G A C G T C C A G T T T A A G G A C C T G G G G C T C T T G A T T G T T G A C G A A G A A C A G C G C T T T G G C G T C A A A C A C A A G G A G C G C T T A A A G C A A C T C A A A G C C A A C G T C G A T G T C T T A A C C C T G A C G G C G A C G C C C A T C C C G C G G A C C T T G C A C A T G T C G A T G A T G G G G G T G C G G G A C C T G T C C G T C T T A G A G A C C C C G C C G A C G G G C C G T T A C C C G A T T C A A A C C T A C G T C T T G G A A C A A A A C G G C G C C G T G A T T C G G G A T G G G A T C C T G C G C G A A A T G C A A C G G G G C G G G C A G G T C T A T T A C C T G C A T A A C C G G G T T C A C G A C A T T G A A C G G G T G G T C G C G C A G T T A G C G G A G C T G G T T C C C G A A G C C C G G A T T G G C T A C A T T C A C G G C C A G A T G A G T G A A A A C G A G T T G G A A G G G G T G C T G T A C G A T T T T A T C C G C G G T G A G T A C G A C G T C T T A G T A A C C A C C T C G A T C A T C G A A A C C G G G G T C G A T A T C G C T A A C G T T A A C A C C C T C T T T G T C G A A G A C G C C G A T C G C T T G G G G C T A G C C C A A C T T T A C C A G A T T C G G G G G C G G A T C G G T C G C A G C A A C C G A G T G G C T T A C G C T T A C T T C A T G T A C C A G G A A A A T A A G G T T C T A A C T G A A C A G G G T G A A A A G C G G T T A G C T G C C A T T C G G G A C T T C A C C G A G C T A G G G T C G G G C T T T A A G A T T G C C A T G C G T G A C C T G T C G A T C C G G G G G G C C G G T A A C C T C C T G G G T A A G C A G C A G C A C G G T T T C A T C G A T T C G G T T G G T T A C G A C T T G T A C A C C G A G A T G T T A G C T G A T G C G G T G G C C A C C A A G C A G G G A A A G A A G C G A C C G G T T A A A T C G A A C G C C G A A G T C G A G C T C G G A G T C G A A G C C T A C T T G C C A A G T A C T T A C G T C G A C G A T C A G C G C C A A A A G A T C G A A T T G T A C A A G C A G A T T C G C C G G G C C A A G A G T G A A G A A G A A C T G A C C G A A T T G G C T G G T G A C C T A A T T G A C C G C T T T G G G G A C T A C C A A A C G C C G G T G G C G A A C T T A T T A A C G A T C G G G A C G A T C A A G C T G T A C G C C G A C C A A G C A A T G C T A A G C G A A A T T G A G C G C A A G C G C G A T A A C A T T T A C G T C A A C T T T A C G G T G G T T G G T A G T A A A A A A A T C A A C G C C C C A C A A A T T A T C C A G G C C C T G G C C A A G A C C C G C T T T A A G G C C A C C A T G G A T G A A A A A G A G G A C G G C G C C A T T T C C T T A C G G C T G G T A A T C C A A C C A A A G A T G A C G G A A C A G G A C T G G T T G A A C C A G C T A C T G G C G C T T A C C A G G G A A T T G G G T C A G C G A G T G C A A G A A G C A A A C A A T G A A C A A G A A G G G G A A A C C A A G C A A T G A
Protein sequence:
M K L T E L A K Q Q P A F S K I K E V I D S G Q R Q L I T G V S G S A K T L L L A A L Q G E L S H P Q L V V C D S L Y H M Q E L V A D L E N L L G E D Q V F A F P V E E V L A T E V A T A S P D Y R L Q R V Q A L N T L L A D Q A A V V V T D A A G L R R R L P K P G D F Q A A T L T V E V G G E L D P T T V G T Q L M A M G Y Q R Q K M V L K P G D F A M R G S I V D I Y A L N T A H P V R I D L F D T E V D S L R Y F D A E S Q R S V E N I R A V T I L P A T D F I A P P A K L A Q L K G E L Q D D Y H H L A Q T A D E E E R Q A L F G L F D P V I S A L D A G Q L P V E M L E Y A D R V Y E Q P A S L L D Y L P A K S N L V L D D W G R I K E G A K R I T E Q E T A W L M D K V A A K H R V R G A T L D N G V M E T L P K R P G P Q T Y L A L F Q K G L G Q V K L A Q I S D L A T R E M Q R F F S Q L D L L K G E L K R W Q S Q G A T V V I M A N S P E R R N Q V A T T L A D F G V A V V Q T A P D Q L M E H Q V Q L V A A T L A N G F E M P P A N L V V I T E A E M F K Q V K N R R P R A Q K L A N A E R I K S Y T D L K P G D Y V V H V N H G I G L F A G I K T M E V D G V H Q D Y M V L D Y R D N A Q I F V P V T Q L N L V Q K Y V S A E S K T P R L N R L G G V E W A K T K R R V A A K I E D I A D D L V D L Y A K R E T E K G F A F P K D D Y L Q E K F D D E F P Y A E T K D Q L Q S I Q E I K A D M E R P R P M D R L L V G D V G Y G K T E V A L R A I F K A V A G G K Q V A F L V P T T I L A Q Q H Y D T M K A R F E G F P V T I A L M S R F K T A K E L K E T D R G L L N G E I D I V V G T H R I L S K D V Q F K D L G L L I V D E E Q R F G V K H K E R L K Q L K A N V D V L T L T A T P I P R T L H M S M M G V R D L S V L E T P P T G R Y P I Q T Y V L E Q N G A V I R D G I L R E M Q R G G Q V Y Y L H N R V H D I E R V V A Q L A E L V P E A R I G Y I H G Q M S E N E L E G V L Y D F I R G E Y D V L V T T S I I E T G V D I A N V N T L F V E D A D R L G L A Q L Y Q I R G R I G R S N R V A Y A Y F M Y Q E N K V L T E Q G E K R L A A I R D F T E L G S G F K I A M R D L S I R G A G N L L G K Q Q H G F I D S V G Y D L Y T E M L A D A V A T K Q G K K R P V K S N A E V E L G V E A Y L P S T Y V D D Q R Q K I E L Y K Q I R R A K S E E E L T E L A G D L I D R F G D Y Q T P V A N L L T I G T I K L Y A D Q A M L S E I E R K R D N I Y V N F T V V G S K K I N A P Q I I Q A L A K T R F K A T M D E K E D G A I S L R L V I Q P K M T E Q D W L N Q L L A L T R E L G Q R V Q E A N N E Q E G E T K Q
GenBank Info
gene - mfd
Gene Locus
Located on scaffold FAM19471-i1-1_scf34
FAM19471-i1-1.1_001518
