genome:
FAM13496-i1-1.1
organism:
FAM13496
old identifier:
FAM13496
species:
Streptococcus thermophilus
taxid:
1308
This genome is a representative of
FAM13496.
Tags
mdpi
Published as part of the MDPI paper (Roder et al., 2020)
Metadata
| Key Parameters |
|
| Representative? |
True |
| Contaminated? |
False |
| Sequencing Information |
|
| Sequencing technology |
Illumina |
| Assembly Information |
|
| GC content |
38.9 |
| Longest scaffold |
136567 |
| Assembly size |
1836358 |
| Number of scaffolds |
62 |
| N50 |
57048 |
| Number of gaps |
2 |
| Total Ns |
2 |
| Annotation Information |
|
| Primary annotation tool |
pgap |
| Date of primary annotation |
Jan. 19, 2020 |
| Version of primary annotation |
2019-11-25.build4172 |
| Number of genes |
2033 |
| Annotations by category |
|
|
# genes with annotation |
# unique annotations |
Browse anntoations |
| EC Number (EC) |
590 |
518 |
link
|
| KEGG gene (KG) |
1187 |
1101 |
link
|
| KEGG reaction (KR) |
434 |
735 |
link
|
| Gene Ontology (GO) |
419 |
1725 |
link
|
| Ortholog (OL) |
1474 |
1356 |
link
|
| Gene Code (GC) |
658 |
382 |
link
|
| Gene Product (GP) |
1773 |
1168 |
link
|
| Eggnog Protein (EP) |
1248 |
1172 |
link
|
| Eggnog Ortholog (EO) |
1592 |
1163 |
link
|
| Eggnog Description (ED) |
1531 |
1155 |
link
|
| ABRicate hit (AR) |
0 |
0 |
link
|
BUSCO
| BUSCO |
lactobacillales_odb10 2019-04-24 |
| Single-copy |
398 |
| Duplicated |
0 |
| Fragmented |
1 |
| Missing |
3 |
| Complete |
398 |
| Total |
402 |
COG
| COG |
description |
value |
| S |
Function unknown |
323.0 |
| L |
Replication, recombination and repair |
159.7 |
| J |
Translation, ribosomal structure and biogenesis |
159.2 |
| E |
Amino acid transport and metabolism |
157.0 |
| K |
Transcription |
107.8 |
| P |
Inorganic ion transport and metabolism |
93.5 |
| M |
Cell wall/membrane/envelope biogenesis |
92.5 |
| F |
Nucleotide transport and metabolism |
86.0 |
| G |
Carbohydrate transport and metabolism |
65.5 |
| V |
Defense mechanisms |
57.0 |
| H |
Coenzyme transport and metabolism |
51.0 |
| C |
Energy production and conversion |
50.5 |
| O |
Posttranslational modification, protein turnover, chaperones |
41.7 |
| T |
Signal transduction mechanisms |
39.0 |
| I |
Lipid transport and metabolism |
35.0 |
| D |
Cell cycle control, cell division, chromosome partitioning |
31.3 |
| U |
Intracellular trafficking, secretion, and vesicular transport |
26.3 |
| Q |
Secondary metabolites biosynthesis, transport and catabolism |
11.5 |
| N |
Cell motility |
4.2 |
| A |
RNA processing and modification |
0.3 |
16S NCBI-db
| taxid |
evalue |
description |
| Streptococcus thermophilus |
0.0 |
Streptococcus thermophilus strain ATCC 19258 16S ribosomal RNA, partial sequence |
Streptococcus salivarius (taxid 1304) |
0.0 |
Streptococcus salivarius strain ATCC 7073 16S ribosomal RNA, partial sequence |
Streptococcus vestibularis ATCC 49124 (taxid 889206) |
0.0 |
Streptococcus vestibularis ATCC 49124 16S ribosomal RNA, partial sequence |
| Streptococcus thermophilus |
0.0 |
Streptococcus thermophilus strain DSM 20617 16S ribosomal RNA, partial sequence |
Streptococcus saliviloxodontae (taxid 1349416) |
0.0 |
Streptococcus saliviloxodontae strain NUM 6306 16S ribosomal RNA, partial sequence |
16S dairydb
| taxid |
confidence |
description |
| Streptococcus thermophilus |
74.456928 |
Streptococcus thermophilus |
Download files
- Assembly
- Coding sequences (CDS)
- Custom annotations
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