genome:
FAM19038-p1-1.1
organism:
FAM19038
old identifier:
FAM19038p
species: Acidipropionibacterium jensenii taxid: 1749
species: Acidipropionibacterium jensenii taxid: 1749
This genome is a representative of FAM19038.
Tags
anaerobe
no description
mdpi
Published as part of the MDPI paper (Roder et al., 2020)
osmophile
no description
Metadata
| Key Parameters | 
|
|---|
| Representative? | True |
|---|---|
| Contaminated? | False |
| Sequencing Information |
|
|---|
| Sequencing technology | PacBio |
|---|
| Assembly Information |
|
|---|
| GC content | 68.7 |
|---|---|
| Longest scaffold | 2999408 |
| Assembly size | 2999408 |
| Number of scaffolds | 1 |
| N50 | 2999408 |
| Number of gaps | 0 |
| Total Ns | 0 |
| Annotation Information |
|
|---|
| Primary annotation tool | pgap |
|---|---|
| Date of primary annotation | May 19, 2020 |
| Version of primary annotation | 2020-03-30.build4489 |
| Number of genes | 2686 |
| Annotations by category |
|
|---|
| # genes with annotation | # unique annotations | Browse anntoations | |
|---|---|---|---|
| EC Number (EC) | 841 | 715 | link |
| KEGG gene (KG) | 1518 | 1313 | link |
| KEGG reaction (KR) | 662 | 1069 | link |
| Gene Ontology (GO) | 544 | 2110 | link |
| Ortholog (OL) | 2378 | 2097 | link |
| Gene Code (GC) | 519 | 422 | link |
| Gene Product (GP) | 2610 | 1497 | link |
| Eggnog Protein (EP) | 1220 | 1150 | link |
| Eggnog Ortholog (EO) | 2407 | 1534 | link |
| Eggnog Description (ED) | 2279 | 1559 | link |
| ABRicate hit (AR) | 0 | 0 | link |
BUSCO
| BUSCO | propionibacteriales_odb10 2019-04-24 |
|---|---|
| Single-copy | 639 |
| Duplicated | 1 |
| Fragmented | 1 |
| Missing | 8 |
| Complete | 640 |
| Total | 649 |
COG
| COG | description | value |
|---|---|---|
| S | Function unknown | 522.0 |
| E | Amino acid transport and metabolism | 213.2 |
| L | Replication, recombination and repair | 197.3 |
| K | Transcription | 183.2 |
| G | Carbohydrate transport and metabolism | 181.5 |
| J | Translation, ribosomal structure and biogenesis | 156.5 |
| C | Energy production and conversion | 128.5 |
| P | Inorganic ion transport and metabolism | 127.2 |
| M | Cell wall/membrane/envelope biogenesis | 109.0 |
| H | Coenzyme transport and metabolism | 104.0 |
| T | Signal transduction mechanisms | 88.2 |
| V | Defense mechanisms | 85.5 |
| O | Posttranslational modification, protein turnover, chaperones | 81.3 |
| F | Nucleotide transport and metabolism | 73.5 |
| I | Lipid transport and metabolism | 63.5 |
| Q | Secondary metabolites biosynthesis, transport and catabolism | 32.0 |
| D | Cell cycle control, cell division, chromosome partitioning | 28.5 |
| U | Intracellular trafficking, secretion, and vesicular transport | 27.3 |
| N | Cell motility | 4.8 |
16S NCBI-db
| taxid | evalue | description |
|---|---|---|
Acidipropionibacterium microaerophilum (taxid 118367) |
0.0 | Acidipropionibacterium microaerophilum strain M 5 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium jensenii | 0.0 | Acidipropionibacterium jensenii strain DSM 20535 16S ribosomal RNA, partial sequence |
Acidipropionibacterium thoenii (taxid 1751) |
0.0 | Acidipropionibacterium thoenii strain NCFB 568 16S ribosomal RNA, partial sequence |
Acidipropionibacterium thoenii (taxid 1751) |
0.0 | Acidipropionibacterium thoenii strain DSM 20276 16S ribosomal RNA, partial sequence |
Clostridium combesii (taxid 39481) |
0.0 | Clostridium combesii strain ATCC 25545 16S ribosomal RNA, partial sequence |
Acidipropionibacterium microaerophilum (taxid 118367) |
0.0 | Acidipropionibacterium microaerophilum strain M 5 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium jensenii | 0.0 | Acidipropionibacterium jensenii strain DSM 20535 16S ribosomal RNA, partial sequence |
Acidipropionibacterium thoenii (taxid 1751) |
0.0 | Acidipropionibacterium thoenii strain NCFB 568 16S ribosomal RNA, partial sequence |
Acidipropionibacterium thoenii (taxid 1751) |
0.0 | Acidipropionibacterium thoenii strain DSM 20276 16S ribosomal RNA, partial sequence |
Clostridium combesii (taxid 39481) |
0.0 | Clostridium combesii strain ATCC 25545 16S ribosomal RNA, partial sequence |
Acidipropionibacterium microaerophilum (taxid 118367) |
0.0 | Acidipropionibacterium microaerophilum strain M 5 16S ribosomal RNA, partial sequence |
| Acidipropionibacterium jensenii | 0.0 | Acidipropionibacterium jensenii strain DSM 20535 16S ribosomal RNA, partial sequence |
Acidipropionibacterium thoenii (taxid 1751) |
0.0 | Acidipropionibacterium thoenii strain NCFB 568 16S ribosomal RNA, partial sequence |
Acidipropionibacterium thoenii (taxid 1751) |
0.0 | Acidipropionibacterium thoenii strain DSM 20276 16S ribosomal RNA, partial sequence |
Clostridium combesii (taxid 39481) |
0.0 | Clostridium combesii strain ATCC 25545 16S ribosomal RNA, partial sequence |
16S dairydb
| taxid | confidence | description |
|---|---|---|
| Acidipropionibacterium jensenii | 90.024836 | Acidipropionibacterium jensenii |