update range to 10000 bp
locus tag: FAM19038-p1-1.1_002497 genome: FAM19038-p1-1.1
species: Acidipropionibacterium jensenii taxid: 1749

Annotations

Type Name Description Pathways
KEGG reaction
 R07456 D-ribulose 5-phosphate,D-glyceraldehyde 3-phosphate pyridoxal 5'-phosphate-lyase; D-Glyceraldehyde 3-phosphate + D-Ribulose 5-phosphate + L-Glutamine <=> Pyridoxal phosphate + L-Glutamate + Orthophosphate + 3 H2O
Gene Product
 pyridoxal 5'-phosphate synthase lyase subunit PdxS
Gene Code
 pdxS
Ortholog
 N0.HOG0001895 pyridoxal 5'-phosphate synthase lyase subunit PdxS
KEGG gene
 K06215 pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] kornec00750kornec01100kornec01240
Gene Ontology
 GO:1901617 organic hydroxy compound biosynthetic process
Gene Ontology
 GO:1901615 organic hydroxy compound metabolic process
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090407 organophosphate biosynthetic process
Gene Ontology
 GO:0072525 pyridine-containing compound biosynthetic process
Gene Ontology
 GO:0072524 pyridine-containing compound metabolic process
Gene Ontology
 GO:0071944 cell periphery
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0051188 obsolete cofactor biosynthetic process
Gene Ontology
 GO:0051186 obsolete cofactor metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0046184 aldehyde biosynthetic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044283 small molecule biosynthetic process
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0042823 pyridoxal phosphate biosynthetic process
Gene Ontology
 GO:0042822 pyridoxal phosphate metabolic process
Gene Ontology
 GO:0042819 vitamin B6 biosynthetic process
Gene Ontology
 GO:0042816 vitamin B6 metabolic process
Gene Ontology
 GO:0042364 water-soluble vitamin biosynthetic process
Gene Ontology
 GO:0040007 growth
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019637 organophosphate metabolic process
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0017144 -
Gene Ontology
 GO:0016843 amine-lyase activity
Gene Ontology
 GO:0016840 carbon-nitrogen lyase activity
Gene Ontology
 GO:0016829 lyase activity
Gene Ontology
 GO:0016020 membrane
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009110 vitamin biosynthetic process
Gene Ontology
 GO:0009108 obsolete coenzyme biosynthetic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006796 phosphate-containing compound metabolic process
Gene Ontology
 GO:0006793 phosphorus metabolic process
Gene Ontology
 GO:0006767 water-soluble vitamin metabolic process
Gene Ontology
 GO:0006766 vitamin metabolic process
Gene Ontology
 GO:0006732 obsolete coenzyme metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006081 cellular aldehyde metabolic process
Gene Ontology
 GO:0005886 plasma membrane
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:pdxS
Eggnog Ortholog
 EO:COG0214
Eggnog Description
 ED:Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP)
EC Number
 EC:4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing); PdxST kornec00750kornec01100

Occurs in the following pathway maps:

Pathway Description
kornec00750 Vitamin B6 metabolism
kornec01100 Metabolic pathways
kornec01240 Biosynthesis of cofactors

Sequences

Nucleotide sequence (GC-content: 69.1 %):

ATGACAGCTGAGAACACACAGGACGAGGCCCAGACGGGCACCTCCAGGGTCAAGCGCGGACTGGCGGACATGCTCAAGGGCGGCGTCATCATGGACGTCGTCACCCCTGATCAGGCCCGCATCGCCGAGGACGCCGGGGCGGTGGCCGTGATGGCTCTGGAGCGGGTGCCCGCCGACATCCGGGCCCAGGGCGGGGTGGCCCGGATGAGCGATCCGGACCTCATCGACGGGATCATCGACGCCGTCTCCATCCCGGTGATGGCCAAAACGCGGATCGGGCACTTCGTCGAGGCCCAGGTGCTGGCCTCCCTCAAGGTCGACTACATCGACGAGTCCGAGGTGCTCAGCCCCGCCGACTACGCCAATCACATCAATAAGTGGGACTTCACCGTGCCCTTCGTGTGCGGGGCCACCAACCTGGGGGAGGCGCTGCGCCGGATCACCGAGGGAGCGGCGATGATCCGGTCCAAGGGCGAGGCGGGCACCGGCGACGTCTCCGAGGCCGTCAAGCACCTGCGGACCATCCGCAGCCAGATCCACAACCTGTCCAGCATGGACGCCGACCAGCTGTACGTCGCCGCCAAGGAGCTGGCGGCTCCCTACGAGCTGGTGCGCGAGGTGGCGCGCACCGGGGCGCTGCCCGTGGTGCTCTTCGTGGCCGGGGGAGTGGCCACTCCGGCAGACGCCGCGCTGGTGATGCAGATGGGGGCGGAAGGGGTCTTCGTGGGATCGGGGATCTTCAAGTCCGGCAGTCCCGCCAAACGGGCCGCCGCCATCGTGAAGGCCACCGCCGCCTTCGATGATCCCGATGTCATCGCCGAGGTCTCCCGGGGGCTCGGTGAGGCGATGGTGGGGATCAACGTCGCCGACGTGCCCGCCCCGCACCGTCTCGCGGAGCGTGGCTGGTGA

Protein sequence:

MTAENTQDEAQTGTSRVKRGLADMLKGGVIMDVVTPDQARIAEDAGAVAVMALERVPADIRAQGGVARMSDPDLIDGIIDAVSIPVMAKTRIGHFVEAQVLASLKVDYIDESEVLSPADYANHINKWDFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVKHLRTIRSQIHNLSSMDADQLYVAAKELAAPYELVREVARTGALPVVLFVAGGVATPADAALVMQMGAEGVFVGSGIFKSGSPAKRAAAIVKATAAFDDPDVIAEVSRGLGEAMVGINVADVPAPHRLAERGW

GenBank Info

gene - pdxS
locus_tag - FAM19038-p1-1.1_002497
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015582858.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - pyridoxal 5'-phosphate synthase lyase subunit PdxS
protein_id - extdb:FAM19038-p1-1.1_002497

Gene Locus

Located on scaffold FAM19038-p1-1_scf1

Cellular location expand

Responsible annotations:
SL-0039: GO:0005886 plasma membrane
SL-0162: GO:0016020 membrane
FAM19038-p1-1.1_002496
FAM19038-p1-1.1_002498