locus tag:
FAM19471-i1-1.1_000625
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Product
|
single-stranded-DNA-specific exonuclease RecJ |
|
|
|
Gene Code
|
recJ |
|
|
|
Ortholog
|
N0.HOG0003553 |
single-stranded-DNA-specific exonuclease RecJ |
|
|
KEGG gene
|
K07462 |
recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] |
kornec03410kornec03430kornec03440 |
|
Eggnog Protein
|
EP:recJ |
|
|
|
Eggnog Ortholog
|
EO:COG0608 |
|
|
|
Eggnog Description
|
ED:Single-stranded-DNA-specific exonuclease RecJ |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec03410
|
Base excision repair |
|
kornec03430
|
Mismatch repair |
|
kornec03440
|
Homologous recombination |
Sequences
Nucleotide sequence (GC-content: 60.5 %):
ATGATTGACAGCAAGTACGCCTGGCAAGGGCAAGCAAACGGCGATAAAGAAACGATCCAGGTGGTGGCCGATGCGACGGGGCTACCGGCGGAGTTAGCGGCCCTTTTAGTCAACCAGGGGATTAAAAGCGCTGACGCCGCCCAACGGTGGCTCAACCCGCAAGCAGAAGACCTCCACACCCCCGACGCGTTGCACGACGTCGACCGGGCCGTTGAGCGGATCATGGCGGCGGTCGAAGCGGGCGAAAAGATCACGGTCTACGGCGATTACGACGCCGACGGGATCACCGCCACTACTTTGATGTACGAGGCACTGGAAACGCTGGGGGCGCAAGTTGATTATTACGTGCCCGATCGTTTCACTGATGGTTACGGGCCCAATCAAGCGGTCTACCAGCGGCTGATTGAGAGGGGCACCCAGCTAATCGTCACCGTTGACAACGGGGTGGCCGGGCTGGCGGCGATTGAGTATGCCAAGGAGCAGGGGGTTGACGTGGTCATTACCGACCACCACGCCCTGCCCGAACAACTCCCGCCGGCCGTGGCGATTGTCCACCCCCAGTACCCGGGTAGCGAGTATCCCTTTGCCGATCTGTCCGGGGTCGGGGTCGCCTTTGAAGTGGCCTGGGCCCTGCTGGGTGAGTTCCCGGTGGAAATGCTGGACCTGGTGGCGATCGGGGAGTTGGCCGACCTGGTTTCCCTGGCCGGTGAAAATCACGCCCTAGTGGCACTGGGGTTGCAGCAGCTCCGCCAGGGGAGCCGGCCGGGCTTGCACGCCCTGCTGAAGGTAGCCGGGGTCAAGGAGGCGACCCTGACCGGGACCGACGTGGGCTTCCAACTAGCGCCGCGCTTAAACGCCCTCGGCCGGATTGAACAGGCCGGCCCGGGGGTGGTCCTCTTGTCCACCTTTGACGAAGAGGAGGCCGAACGGTTAGCTAAAGAAGTCGATCAAACCAACGAGGAGCGTAAGCAACTGGTGGAGCAGATCACTAAAGAAGCCCTCGCAATGGCGGCTAACCAACAGGTACCCGCCCTGGTCTTGGTGGGCCACGGCTGGCACCAGGGGGTGTTAGGGATCGTGGCGGCCCACGTGGTTCAAGCAACCGGTAAGCCAACCATCGTCGCTTCCGCCAACGAGGGTGAGACGATCGCGAAGGGCTCCGGCCGCTCGGTGGAGGGCCTCGATTTGTTCGCCGCCCTGGATCAGCACCGCGACTTGATGACGGCCTTCGGGGGTCACGCAATGGCCTGCGGGATGTCCTTTGAATTAACTGCGGCAGCGCCCCTACAAGCGGCCTTAAACGAAGAGGTCACGGCGCAAGGCTTTAACCAGCAGCAAAAACCGCCGTTAAAAATTACCCTGACCTTGGCACCAGACCGGCTCACCCAGGACCTGTACACGCAAATCCAGCGGTTGGCACCCTTTGGCCCGGGCAACGAGGAGCCCCAAATCGAACTCGACGTCAAGGGACCGGTGGCGACCCAGGTGATGGGCAAGGACAAGTCCCACCTTAAACTAAAGGTCGGTCAACCGCCGTTAGACGTGGTCGCCTTTGGCAAGGCTAGCCTAGCACCGGCCCTGGCCGAGGCGGAAGAAGTCAAACTGGTCGGCACCCTCAGCTTAAACGAGTGGCGGGGCAAGACCAGCTGCCAGCTGATGCTAACCGACGTGGCGGCCACCGGAGTCACCGTGCTCGACCAACGGACGGCCCGGCTGTTGCCGCCGATGTTTGAACCGGCTGCGGTTTACCTGGCCTTCGATGAGCGGCTGCGCAATAACATTAATGGCCACGCTAACGGGCCGGTGGTCGGCCCTAAGGACCTCACCGCCGACCTGGTAGCCAACCAGGAACTGGTAGTGGTTGATTGCCCGCCGATCATTAGCCAGCTGACCACAAGCTTGGCTAAGTGCGCGGCGGCTAGTTCGATCCGACTCCTGTGCTACTTCAACCAGGCCCCCCTGACCGGGATGCCAGCCTACCAGGCCTTTGCCAACCTGTACCGCCTGCTAGGTCAAAACCCCAACATAAACATCAACCAGCAGGTCAACCCAATTAGTAACTACCTGCGCTTGCCAGCGGATCAGTTAATTTTCATGATAAATGTGTTTTTTGAGGCTGGATTTGTTACAATAAAAGATGGTGTTTTAAATCTCGTCCCGCAGGCTCAGCGGCGGGACCTTAAAGAAACAACGAGTTATCGTCGCCGCCAGGCGCAATTAGAAGTTGAACGGGCCCTGGTCCATTCGTCTCACCCCGATCTAGTGGCGTGGGTCAAGAGGCTGGTTGGCGCGCGCTAA
Protein sequence:
MIDSKYAWQGQANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHTPDALHDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLGAQVDYYVPDRFTDGYGPNQAVYQRLIERGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAVAIVHPQYPGSEYPFADLSGVGVAFEVAWALLGEFPVEMLDLVAIGELADLVSLAGENHALVALGLQQLRQGSRPGLHALLKVAGVKEATLTGTDVGFQLAPRLNALGRIEQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQQVPALVLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVEGLDLFAALDQHRDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLAPDRLTQDLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKVGQPPLDVVAFGKASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDVAATGVTVLDQRTARLLPPMFEPAAVYLAFDERLRNNINGHANGPVVGPKDLTADLVANQELVVVDCPPIISQLTTSLAKCAAASSIRLLCYFNQAPLTGMPAYQAFANLYRLLGQNPNININQQVNPISNYLRLPADQLIFMINVFFEAGFVTIKDGVLNLVPQAQRRDLKETTSYRRRQAQLEVERALVHSSHPDLVAWVKRLVGAR
GenBank Info
gene - recJ
locus_tag - FAM19471-i1-1.1_000625
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638751.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - single-stranded-DNA-specific exonuclease RecJ
protein_id - extdb:FAM19471-i1-1.1_000625
Gene Locus
Located on scaffold FAM19471-i1-1_scf8
FAM19471-i1-1.1_000624
