update range to 10000 bp
locus tag: FAM19471-i1-1.1_000716 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 thymidine kinase
KEGG reaction
 R08233 ATP:5-fluorodeoxyuridine 5'-phosphotransferase; 5-Fluorodeoxyuridine + ATP <=> 5-Fluorodeoxyuridine monophosphate + ADP kornec00983
KEGG reaction
 R02099 ATP:deoxyuridine 5'-phosphotransferase; ATP + Deoxyuridine <=> ADP + dUMP kornec00240kornec01100
KEGG reaction
 R01567 ATP:thymidine 5'-phosphotransferase; ATP + Thymidine <=> ADP + dTMP kornec00240kornec01100
Ortholog
 N0.HOG0003470 thymidine kinase
KEGG gene
 K00857 tdk, TK; thymidine kinase [EC:2.7.1.21] kornec00240kornec00983kornec01100
Gene Ontology
 GO:1901657 glycosyl compound metabolic process
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901293 nucleoside phosphate biosynthetic process
Gene Ontology
 GO:1901135 carbohydrate derivative metabolic process
Gene Ontology
 GO:0090407 organophosphate biosynthetic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0072527 pyrimidine-containing compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0055086 nucleobase-containing small molecule metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0046125 pyrimidine deoxyribonucleoside metabolic process
Gene Ontology
 GO:0046104 thymidine metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034654 nucleobase-containing compound biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019637 organophosphate metabolic process
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0019206 nucleoside kinase activity
Gene Ontology
 GO:0019205 nucleobase-containing compound kinase activity
Gene Ontology
 GO:0019136 deoxynucleoside kinase activity
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0016772 transferase activity, transferring phosphorus-containing groups
Gene Ontology
 GO:0016740 transferase activity
Gene Ontology
 GO:0016310 phosphorylation
Gene Ontology
 GO:0016301 kinase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009165 nucleotide biosynthetic process
Gene Ontology
 GO:0009162 deoxyribonucleoside monophosphate metabolic process
Gene Ontology
 GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
Gene Ontology
 GO:0009124 nucleoside monophosphate biosynthetic process
Gene Ontology
 GO:0009123 nucleoside monophosphate metabolic process
Gene Ontology
 GO:0009120 deoxyribonucleoside metabolic process
Gene Ontology
 GO:0009117 nucleotide metabolic process
Gene Ontology
 GO:0009116 nucleoside metabolic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006796 phosphate-containing compound metabolic process
Gene Ontology
 GO:0006793 phosphorus metabolic process
Gene Ontology
 GO:0006753 nucleoside phosphate metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006213 pyrimidine nucleoside metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004797 thymidine kinase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:tdk
Eggnog Ortholog
 EO:COG1435
Eggnog Description
 ED:thymidine kinase
EC Number
 EC:2.7.1.21 thymidine kinase; thymidine kinase (phosphorylating); 2'-deoxythymidine kinase; deoxythymidine kinase (phosphorylating) kornec00240kornec00983kornec01100

Occurs in the following pathway maps:

Pathway Description
kornec00240 Pyrimidine metabolism
kornec00983 Drug metabolism - other enzymes
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 51.4 %):

GTGGCGCAGTTGTTCTTTAAGTACGGCGCAATGAATTCTGGTAAGTCAATTGACATTCTAAAGGTGGCCCACAATTATGAGGAGCAGGGCAAGCCGGTTGAATTGTTGACGAGCGGAATTGATGACCGGGCCGGCACCGGGGTGATCGCCAGCCGGATTGGTTTGAAACGGCGGGTCACGCCGATCATGGAGGACACCGACGTTTTTGAACTGATCAAACAAATCGATCACCGGATTTACTGTGTTTTGATTGACGAGGCCCAGTTCTTGAGTAAGGCCCACGTACTGCAACTATGCCACGTGGTTGACGACCTCAAGATCCCGGTGATGGCCTTTGGGCTCAAAAACGACTTTAAAAACGAGTTGTTTGAGGGATCCGAGGCCCTGTTGATCTACGCCGATAAGATTGAAGAGATGAAGACGATCTGCTGGTTTTGCCCCCGCAAGGCAACCATGAACCTGCGGATTAGCGATGGGCACCCGGTTTACCAAGGCGCCCAGGTTCAAATCGGCGGTAACGAGTCCTACTACCCGGTTTGCCGGGAACACTATTTTCACCCAGATTTGCCAAGTGAACAGGAGAATGAGTAA

Protein sequence:

MAQLFFKYGAMNSGKSIDILKVAHNYEEQGKPVELLTSGIDDRAGTGVIASRIGLKRRVTPIMEDTDVFELIKQIDHRIYCVLIDEAQFLSKAHVLQLCHVVDDLKIPVMAFGLKNDFKNELFEGSEALLIYADKIEEMKTICWFCPRKATMNLRISDGHPVYQGAQVQIGGNESYYPVCREHYFHPDLPSEQENE

GenBank Info

locus_tag - FAM19471-i1-1.1_000716
EC_number - 2.7.1.21
inference - COORDINATES: similar to AA sequence:RefSeq:WP_006916908.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - thymidine kinase
protein_id - extdb:FAM19471-i1-1.1_000716

Gene Locus

Located on scaffold FAM19471-i1-1_scf9

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_000715
FAM19471-i1-1.1_000717