Annotations

Type Name Description Pathways
Gene Code
rnmV
Gene Product
ribonuclease M5
Ortholog
N0.HOG0003396 ribonuclease M5
KEGG gene
K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
Gene Ontology
GO:1901360 organic cyclic compound metabolic process
Gene Ontology
GO:0140098 catalytic activity, acting on RNA
Gene Ontology
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
Gene Ontology
GO:0090501 RNA phosphodiester bond hydrolysis
Gene Ontology
GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
GO:0090304 nucleic acid metabolic process
Gene Ontology
GO:0071840 cellular component organization or biogenesis
Gene Ontology
GO:0071704 organic substance metabolic process
Gene Ontology
GO:0046483 heterocycle metabolic process
Gene Ontology
GO:0044238 primary metabolic process
Gene Ontology
GO:0044237 cellular metabolic process
Gene Ontology
GO:0044085 cellular component biogenesis
Gene Ontology
GO:0043822 ribonuclease M5 activity
Gene Ontology
GO:0043170 macromolecule metabolic process
Gene Ontology
GO:0042254 ribosome biogenesis
Gene Ontology
GO:0034660 ncRNA metabolic process
Gene Ontology
GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
GO:0034470 ncRNA processing
Gene Ontology
GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
Gene Ontology
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters
Gene Ontology
GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
GO:0016787 hydrolase activity
Gene Ontology
GO:0016072 rRNA metabolic process
Gene Ontology
GO:0016070 RNA metabolic process
Gene Ontology
GO:0010467 gene expression
Gene Ontology
GO:0009987 cellular process
Gene Ontology
GO:0008152 metabolic process
Gene Ontology
GO:0008150 biological_process
Gene Ontology
GO:0006807 nitrogen compound metabolic process
Gene Ontology
GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
GO:0006396 RNA processing
Gene Ontology
GO:0006364 rRNA processing
Gene Ontology
GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
GO:0004540 ribonuclease activity
Gene Ontology
GO:0004521 endoribonuclease activity
Gene Ontology
GO:0004519 endonuclease activity
Gene Ontology
GO:0004518 nuclease activity
Gene Ontology
GO:0003824 catalytic activity
Gene Ontology
GO:0003674 molecular_function
Eggnog Protein
EP:rnmV
Eggnog Ortholog
EO:COG1658
Eggnog Description
ED:Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
EC Number
EC:3.1.26.8 ribonuclease M5; RNase M5; 5S ribosomal maturation nuclease; 5S ribosomal RNA maturation endonuclease

Sequences

Nucleotide sequence (GC-content: 56.5 %):

ATGGACAAGATTAAAGAAGTAATTGTGGTGGAGGGTAAAGACGACACCAAGCAGGTGCAACGAGCCGTGTTGGCCGACACCTTTGAAACGAACGGCTCCGCCCTGTCAAAAAAGGCGCTTGAACAAATAAAAAAACTCCAGCAAAGCCGGGGGGTGATCGTCTTCACCGATCCCGATTTTAACGGCGAACGGCTCCGTAAGCTGATCGACCAAAACGTTCCCGGCGTCAAACACGCCTTCATCCGGCGCGACCAGGGGGTGCCAACCGAGGCCCACGGGAGCCTGGGGGTTGAACACGCAAGCTCGGCGACCATCTTGGCGGCCCTGCAAAACGTCTACACCACCACTCACGTTTTAACCCCCACCTTTAGCAACCAGGACCTCATTAAGGCGGGCTTGGCGGGGAGTCCGGTGGCCAAGAGGCGCCGGGAGCGCCTAGGTGAATTGCTGGGGATTGGCTATGGCAACGCTAAGCAACTATTGAAGCGCCTCGACCTCTTTGCCATTGACCGGCCGACCTTTGAACGGGCGGTTGCACAACTTGATCAGGAAGGGAAAACGCATGAGTAA

Protein sequence:

MDKIKEVIVVEGKDDTKQVQRAVLADTFETNGSALSKKALEQIKKLQQSRGVIVFTDPDFNGERLRKLIDQNVPGVKHAFIRRDQGVPTEAHGSLGVEHASSATILAALQNVYTTTHVLTPTFSNQDLIKAGLAGSPVAKRRRERLGELLGIGYGNAKQLLKRLDLFAIDRPTFERAVAQLDQEGKTHE

GenBank Info

gene - rnmV
locus_tag - FAM19471-i1-1.1_000744
EC_number - 3.1.26.8
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012390795.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease M5
protein_id - extdb:FAM19471-i1-1.1_000744

Gene Locus

Located on scaffold FAM19471-i1-1_scf10


FAM19471-i1-1.1_000743
FAM19471-i1-1.1_000745