update range to 10000 bp
locus tag: FAM19471-i1-1.1_000818 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R00451 meso-2,6-diaminoheptanedioate carboxy-lyase (L-lysine-forming); meso-2,6-Diaminoheptanedioate <=> L-Lysine + CO2 kornec00300kornec01100kornec01110kornec01120kornec01230
Ortholog
 N0.HOG0001438 diaminopimelate decarboxylase
Gene Code
 lysA
KEGG gene
 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] kornec00300kornec01100kornec01110kornec01120kornec01230
Eggnog Protein
 EP:lysA
Eggnog Ortholog
 EO:COG0019
Eggnog Description
 ED:Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine
EC Number
 EC:4.1.1.20 diaminopimelate decarboxylase; diaminopimelic acid decarboxylase; meso-diaminopimelate decarboxylase; DAP-decarboxylase; meso-2,6-diaminoheptanedioate carboxy-lyase kornec00300kornec01100kornec01110kornec01120
Gene Product
 diaminopimelate decarboxylase

Occurs in the following pathway maps:

Pathway Description
kornec00300 Lysine biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 56.6 %):

ATGAATTCACAGATTGAACCAGAACAGATTAACGATCAGGGGCACCTAACGATTGGCGGCGTTGACAGCCTTGAATTAGCGGCCAAGTACCAAACGCCCCTGGTCGTGTACGACGTAGCGGCGATTCGCCATCAAATCCGCGCCTTTAAAAAGGTCTTTGCCAAAAACCAGGTGGCAGCGGAGGTCTCTTACGCCAGCAAGGCCTTTAGCGCCATCGCCATTTACCAGGTGGTGGCCCAAGAGGATGGCCACATTGACGTGGTCTCCGGTGGCGAATTAACAACGGCCATCAAGGCGCACTTCCCGATGGAAAAGGTTAGTTTCCACGGTAACAACAAGTCTAAAGAAGAGCTGGAATTGGCCGTCCAAAACGGGGTCGGGATGATCATCATCGATAACTTCCACGAGATCGACTTGCTGGGCGAGGTCTTAGATGAACAAGACGCCACCGCGACCGTTAGCCTGCGGATCACCCCCGGGATTGCCGCCCACACCAATGAGTACATTCAAACCGGCCAGGTAGATTCCAAGTTTGGCTTTGACCTGGAATCGGGGCAAGCGGACCGGGCCCTAGAAGAGGTCTTGGCCAACCCCCGGCTCAAGGTGGTCGGCCTCCACGCCCACATCGGCTCCCAAATCTTTGAGGTCGTGGGCTTTGAAGGGGTGGCCAAGAAGTTAGTGGACGTCGCCGAGCACTGGCACGAGGAGTTTGGCTTTCAAACGCGGGTCTTAAACGTCGGCGGTGGCTTTGGAATCCGCTACGTTCAAGAAGACCAACCGCTCCCGCCGGAAGAATTTGTCGATGCAATCATCAAGGCCGTTAAAAAGGAGGTCGCCAAAAAGGGCCTGTCAATGCCGGCGATTTGGATTGAGCCGGGGCGCTCGATCGTTGGACCGGCCGGCTACAGCCTGTACACGGTTGGTTCACGAAAAGACCTCCCGGGCTACCAGCCCTTCGTGACCGTTGACGGTGGGATGGGGGACAACATCCGCCCGGCCCTTTACCAGGCCGCTTACGAAACGGTGTACGCTAAAGACCCCCGTCAAAAACCGGAAGAGACCGTCAGGATTGCCGGTAAGTATTGCGAATCCGGCGACATCTTAGCAAGAGATCAGGCCCTCCCCAAAACCAAGCCGGGCGACCTCTTGGTAATGCTAGACACCGGAGCGTACGGGTACGCGATGGCCTCTAACTACAACCGGAACCCCCGCCCGGCGGTGGTCTTCGTTGAAAACGGCCACGCTCAACTGGTCATCCAACGCGAAAGCTGGGCGGATACCTGCCGGCTCGACTTACCGCTCGCAAGTGAAGATAAATAA

Protein sequence:

MNSQIEPEQINDQGHLTIGGVDSLELAAKYQTPLVVYDVAAIRHQIRAFKKVFAKNQVAAEVSYASKAFSAIAIYQVVAQEDGHIDVVSGGELTTAIKAHFPMEKVSFHGNNKSKEELELAVQNGVGMIIIDNFHEIDLLGEVLDEQDATATVSLRITPGIAAHTNEYIQTGQVDSKFGFDLESGQADRALEEVLANPRLKVVGLHAHIGSQIFEVVGFEGVAKKLVDVAEHWHEEFGFQTRVLNVGGGFGIRYVQEDQPLPPEEFVDAIIKAVKKEVAKKGLSMPAIWIEPGRSIVGPAGYSLYTVGSRKDLPGYQPFVTVDGGMGDNIRPALYQAAYETVYAKDPRQKPEETVRIAGKYCESGDILARDQALPKTKPGDLLVMLDTGAYGYAMASNYNRNPRPAVVFVENGHAQLVIQRESWADTCRLDLPLASEDK

GenBank Info

gene - lysA
locus_tag - FAM19471-i1-1.1_000818
EC_number - 4.1.1.20
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003683241.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - diaminopimelate decarboxylase
protein_id - extdb:FAM19471-i1-1.1_000818

Gene Locus

Located on scaffold FAM19471-i1-1_scf11

FAM19471-i1-1.1_000817
FAM19471-i1-1.1_000819