update range to 10000 bp
locus tag: FAM19471-i1-1.1_001164 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rlmD
Ortholog
 N0.HOG0000733 class I SAM-dependent RNA methyltransferase
KEGG gene
 K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
KEGG gene
 K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
Eggnog Protein
 EP:rumA_1
Eggnog Ortholog
 EO:COG2265
Eggnog Description
 ED:Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
EC Number
 EC:2.1.1.35 tRNA (uracil54-C5)-methyltransferase; transfer RNA uracil54 5-methyltransferase; transfer RNA uracil54 methylase; tRNA uracil54 5-methyltransferase; m5U54-methyltransferase; tRNA:m5U54-methyltransferase; RUMT; TrmA; 5-methyluridine54 tRNA methyltransferase; tRNA(uracil-54,C5)-methyltransferase; Trm2; tRNA(m5U54)methyltransferase
EC Number
 EC:2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase; RumA; RNA uridine methyltransferase A; YgcA
Gene Product
 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

Sequences

Nucleotide sequence (GC-content: 59.4 %):

ATGCAAAAACCAACACACCGTAACTTCAAGCGGCGGCCCAAGCGCTACGCCCACCCGGTCGACGCTAAGGTCGGCGACCGCTTCCCCCTGTCAATTAAAAAACTCGGGGTCGAGGGGCAAGGAATCGGCTACTTCAAACACAAAGTCTGCTTTGTCCCCGGCGCCCTGCCGGGAGAAGTGGTCGTCGCTGAGGTGACCGTCGTCCACGACAACTACTTAGAGGCCAAGCTCCACCAACTCCGCCAACCCAGCCCGGACCGGGTCACACCTAAGGACGCCTACGCTGGGCTGGCCGGGGGCTTTGAACTCGAAACCCTGGCCTACGACAAGCAACTGGCCTTTAAAAAGCAGGTAGTCTTAGAGGCACTGGCCAAGTTCAAGCCCCTGGGTTACCGCCACTACTGGGTTAAGGATACCCTGGCCGCCCCGCACCCCTACGGCTACCGTAACAAGGCCCAGTTCCAGGTCCGCATGCAAGATGGGCACGTGGTGGCGGGACTCTACCAAGCCGACAGCCACACCGTCGTTGACATGCAAACCTGCGCCGTTCAAATGCCGGGGACGATGAAGGTCATCAACACCCTGGTCAAACTGATTGAGGAATTGGCGATCCCGGTTTATAACGAAGCCAACCAGTCCGGGATCATCAAGACCCTGGCGGTCCGCGAATCTCTGGCGACCGGACAAATTCAGGTGGCCATCATTACCAACACGGCCAAGTTGATCAAAAAACACGCCCTCTTGGTGGCGATTGAAGACCAACTCCCCGAAGTCACCTCGGTGGTCCAAAACGTCAACCCCGGCGACACCCCCCTGGTTTGGGGCGACGAGACCACCCTCTTGTACGGGCAAGACTACATCACCGAGAGCCTGATGGGGCTGGACTTCCGCCTGTCGGCACGGTCATTTTTGCAGCTCAACCCGGAACAAACTGAGGTTCTATACGAAGAAGCGGCTAAGGCCCTGGACCTGTCCAAGGACGACACCCTGATCGACGCCTACGCCGGGATCGGGACGATCGGCCTGTCCTTAGCCAACCGGGTCAAGCAAGTGATCGGGATGGAGACGATCGCCGACGCCGTCCAAGACGCCAACAATAACGCTACCTTAAACGGGGTCACCAACGCCCGCTACGAAGTCGGCCCGGCCGAAGAGCTCCTGCCGAAATGGCGCAGTCAGGGCCAACACTTTGACGCCCTGGTGGTTGACCCGCCGCGGACCGGGCTGGACAACGCCTTGATCGATACGATCCTCCAGGAAAAGCCGGCCAAGTTTGCCTACGTCTCCTGCAATATGGCCACCTTGGCCCGTAACCTAGCCCGCCTGGTCCCGACCTACCGGGTTGCTTACATCCAGCCGGTCGACATGCTGCCGCAAACGCCCCGGTGCGAAGCGGTGGTTAAGTTGGTCTTGAATGAAGATTAG

Protein sequence:

MQKPTHRNFKRRPKRYAHPVDAKVGDRFPLSIKKLGVEGQGIGYFKHKVCFVPGALPGEVVVAEVTVVHDNYLEAKLHQLRQPSPDRVTPKDAYAGLAGGFELETLAYDKQLAFKKQVVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGLYQADSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIKTLAVRESLATGQIQVAIITNTAKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYITESLMGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRSQGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYIQPVDMLPQTPRCEAVVKLVLNED

GenBank Info

gene - rlmD
locus_tag - FAM19471-i1-1.1_001164
EC_number - 2.1.1.190
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003685712.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
protein_id - extdb:FAM19471-i1-1.1_001164

Gene Locus

Located on scaffold FAM19471-i1-1_scf21

FAM19471-i1-1.1_001163
FAM19471-i1-1.1_001165