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Tools
TAXID 1613
ORGANISM FAM19471
GENOME FAM19471-i1-1.1
GENE FAM19471-i1-1.1_001172
locus tag:
FAM19471-i1-1.1_001172
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
Type
Name
Description
Pathways
Ortholog
N0.HOG0001029 exonuclease SbcCD subunit D C-terminal domain-containing protein
KEGG gene
K03547 sbcD, mre11; DNA repair protein SbcD/Mre11
Gene Product
exonuclease SbcCD subunit D
Eggnog Protein
EP:sbcD
Eggnog Ortholog
EO:COG0420
Eggnog Description
ED:SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'- 5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity
Sequences
Nucleotide sequence (GC-content: 54.3 %):
A T G A G G T T T C T A C A C A C T G C C G A T T G G C A C G T T G G T A A A A A G T T G A A T G G G T T C G A T T T A C T G G C C G A A C A G C A C G A C G C C T T C T T A A A A A T T A A T C A A T T A G C A A A G G A T T A T A A A G T T G A T G C C G T G G T G G T C G C C G G G G A C C T T T A C G A C C G C T C A G T T C C A A G C G A A G A G G C G G T C G A A G A G T T A A A C A A A G A C T T A A T T C A A A T G A A T C T T A A G G A A G G T T G G C C A C T C T T G G C G G T C T C G G G C A A C C A C G A T T C G G C G G T C C G T T T A G C C A C C G G G G G G G A C T G G T T T A A G G C G A C C A A C T T C T T T A T G C A C A C C A C G G T C G C C C A G G C C A T C G A A G A G C C G G T C A C C C T G G G C G A T A C C C A G T T C T T C T T G C T G C C C T T T T T T G G C C T C C A G G A G G T A C G T A A T T A C T T T G G T G A C C C G G A G A T C A G G G A T T T G A A A A C G G C A A T G G C C C G G A T C G T G A C T A A G A T G G A A G A A G A A T T T G A C C C G G A C C G C G C C C A C G T T T T G G T G G C C C A C T T C T T T G C G G C T G G A T C C A G C C A C A C C G A T T C G G A A A C C C A A A C C G A G G T G G G G G G C C T C G A T G C G G T A C C G G T T G A C C T G A T G G C A C C C T T T G A T T A C G T G G C G T T G G G C C A C T T G C A C A A T A A A A A C G C C C T T C A A G C A C C G C G G G T T A A G T A C G C C G G A T C A C C G C T C A A G T T T T C G G C G A G C G A G G T C A A C C T C G A T A A G G G C G T C T G G A T C G T T G A C A C C C A G C C C T T T A A C C T T C A G T G G G T C T C C T T A G A G C C G C T C C A C G A C C T A G T G A A G C T A A C C G G C T C C T T T G A C G A A C T G G C A A C G G T G G A G T A C G C C A G C C A C T A C C A G G A G G A C G A C T T T T T T G T A A T T G A G T T G A C C G A T A C G G C G C C G A T C C C A G A T T T G A T G A A C A A G C T G C G C C A C T A C T A C C C T A A A A T C A T T G C C C T T A G C C G G G T G A A C A A G G C C G C T G A C C A G A G T G A T C T A G C G G C G C C C G C G C A G G A C T T G G A A A A C A A G G A T C C G C T G G C C C T G T T G A G T G A C T T T T A C C A C C A G G T G A C C G G C G A A G A G T T A A G C G A T A A C C A G C G C C A G T G G G C C A A A G A C G C C C T G C T A G C A G C C C A A A A G G A G G A G G A A G G A T G A
Protein sequence:
M R F L H T A D W H V G K K L N G F D L L A E Q H D A F L K I N Q L A K D Y K V D A V V V A G D L Y D R S V P S E E A V E E L N K D L I Q M N L K E G W P L L A V S G N H D S A V R L A T G G D W F K A T N F F M H T T V A Q A I E E P V T L G D T Q F F L L P F F G L Q E V R N Y F G D P E I R D L K T A M A R I V T K M E E E F D P D R A H V L V A H F F A A G S S H T D S E T Q T E V G G L D A V P V D L M A P F D Y V A L G H L H N K N A L Q A P R V K Y A G S P L K F S A S E V N L D K G V W I V D T Q P F N L Q W V S L E P L H D L V K L T G S F D E L A T V E Y A S H Y Q E D D F F V I E L T D T A P I P D L M N K L R H Y Y P K I I A L S R V N K A A D Q S D L A A P A Q D L E N K D P L A L L S D F Y H Q V T G E E L S D N Q R Q W A K D A L L A A Q K E E E G
GenBank Info
locus_tag - FAM19471-i1-1.1_001172
Gene Locus
Located on scaffold FAM19471-i1-1_scf21
FAM19471-i1-1.1_001171
