locus tag:
FAM19471-i1-1.1_001173
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Product
|
SMC family ATPase |
|
|
|
Ortholog
|
N0.HOG0001728 |
SMC family ATPase |
|
|
KEGG gene
|
K03546 |
sbcC, rad50; DNA repair protein SbcC/Rad50 |
|
|
Eggnog Protein
|
EP:sbcC |
|
|
|
Eggnog Ortholog
|
EO:COG0419 |
|
|
|
Eggnog Description
|
ED:Putative exonuclease SbcCD |
|
|
Sequences
Nucleotide sequence (GC-content: 58.9 %):
ATGAAACCACTCAAGTTAACGATGCACTACTTTGGGCCGTACGAAGACACCACGATTGACTTCACCAGGTTTGACGCTAGCCCGTTATACCTGATTGCCGGCGACACCGGGAGCGGGAAGACGACCATCTTTGACGCCATGTGCGTGGCCCTGTACGGCAACGCCTCCAACGAGCGCCGGTCGGCCGAAATGTTTCGCTCCGACTTTGCGACCCCCAAGCAGGTGACCGAGGTAACCTTCCTATTTGAACATAAGGGGGTCACCTACCAAGTCTACCGGCGGCCACGGCAAGTCCTGACGATGACCCGGGGCAAGGGGGAAAAGCAATACGACCCAAAGGTTTCGCTAGTGTACCCAGTTGGCGCTGAAAACCCCCGTGAGTTGACGAAGATCACCGAGGTCAATCAGTTCGTTCAGGACCTTTTGGGGGTCAACGCCAGTCAGTTCCGCCAGCTGATCATCCTGCCCCAGGGCGAGGTGCAACGCTTTTTAATGGCGGATTCCAAGACCAAAGAAGAGATCCTCACCACCCTCTTTCAAACCCAGCTCTACACCAACTGGGTCACGAAGCTGGATGAGCGCGCCAAAAGTATGCGTGATCAAACCCAAGACATCACCAGTCAGCTCAAGGTCCTGATGGGCCAAGTTGACGGGGTTAGCGACCAGCTAGAGCTCGACCAGTGGCAAGTGGCGGTCGGGGACCTGCTGACCGAAAAAAAGGCGGAGCTAAGGGCGGTTACCGAACAAGTAACCACGGCACAAAAAGCGGCCGACCAGTTGCAAGCCCAGTTGACCGCGGAACGGCGCTTGGCCGAGGACCACGCTGCGTTAGTTTCCTGTGAAACGCAACAAGTGGAGCTTAAAGAACGGGCGCCGCAAATTAAACGCTTGGCCGACGAAAACGAAGAAACGGCGTGGGCCCAACAACACCAAACGGCATACCACGAGTGGCAAGCCGGGACGACCAAACTGGCGGACCTCACCAAGCAGCAAGCGGCGTGTGAACAAAAACAAGCCGCGGTTAAGGTGCGGGTGCAAGAATTGACCCAAGTGGCCGAACGTTTAAAGGAACAAGAACCGGCCGTCCAAGAACGCCAACGCCAAGTGGCCAACATTCGAGAGAAGCTCCCCCTCTTTGAAGAGGTGGCCGCCCTAAGTAAGCGGCTGGAAAAAGAGCGCCGGGCCCAAGTTGAACAAGAACGGACGGTTAATGACCAAACGAGCGCCCTGACTAAGTTACAGGCCGAGTTAGACCGGGTGGATCAGGAACTCCAAGCCGCTCCCGACCTGACCCAAGCGGCGGTTACGATTGCCACCAGGGTCCAACAAGTAGTCCGCTGGCAACAGGCAGTGACCGCCCTCGGGGAGCAAGCCAAGGAGCTGGCCAACCAGGAGCAAGCCCTGCGTGACCTAAACGCTCAGCTTGCCGAGGCTAAAAAAACCGCCCAAGCCGCTCAAGCGGACCTTAAAGAAAAGAAGAAGGCCCGCCTCGCCGCCGTGATTGCAACCCTGGCTAGCGAGCTGGAGGAAGGGGAGGCCTGCCCGATTTGCGGGAGTACCACCCACCCTCACGTTGCCACAGCGGTGCAAACGGGCCAGGAAGTAACCGAGGCAACGCTAGATGCGGCCCAGGCGAAAGTGACCAAGGCGGAAACGACCCTGGCGACTTTAACCACGCGGCAAGCGAACCAAGACAGCCAGCTAGAAAAGGGACGGGCAACTTTCCAAGACGAATTGGCAACGCTTTGCCAAGCCGTGGCAAGCCCAGCGGGTGACCTGGAGGCAGCCACGGCGGCCGTGGCCGAAGCCGTCGCGGCGCTGGACCACGACCGCCAGGAATTGCAAAACGCCCAAGCCAAGGAAACGGAAAACCAGCAACGCCAGGTAAGCCTGACCAAGCAGATCCAGGCGGGGCAAGCAAAGTATCAGGAACTGCAAGCAGCGGTCAATGAAGGGCGCCTGAACGTCAACCAAACCCAAACCGAGTTAGTTAACAAGCAGGGCCAGTTGCCCGCCGAACTGCCGGACCTGGCGAGTGCCGAGCGGTGGCTAAAGGAAGAGGAACAGGCGTTAGCGGACTTTGCCAGCCAGCAAACGCAAAACCAGGACGCCCTTAGTCGGGCCCAAACCCAATTAACCCAACTGACCACCACGAGCCAGCAGCTAGCGGACAGCGCCAAAGCGACCGCAGCCGAAGTGGACCAACGCAAGCGGGAACTAACGGCGGCCCTAGCAGAACGCCAAGCAGCGTGGGAGGTCTTTGAACGGGCCCTGGCCCGCGTTCCGGAACTGGCGGCCCGCCAAAGGGAGGTCAACGACTACCGTCAACGGCTGGCGAGCCTGGCCGACCAGCGCCAACGGTTGGTGGAACAAATCGCCGGCCGGCCCAAGCCGGACGTGGAAAAGACGGCGGGGCAGTTGAAGAAAGCCCAGGTGAAGTTGGACCAGCTCAAAGGGGCGGTGATTGAACAAGGCAACGCCCTGACGCGGATCAAGGAAATTAAACAACAAGTCAAAAAAAAGGCGGCTAAGCAGGGCGACACCGAGCGCCAACTGCGGGAACTTTCCAGCCTGTGCGCCCTACTCAAGGGGCAGGGCGGGACCCAGTTAGGCTTGCAGCGGTATGTCCAACGCCACTACTTTACCGAGGTCTTGGCGGTCGCTAACCAGTGGCTAGCTAAGTTAACCCACGGTCGCTACCAAATGCACCTGGATGGGGAAGCCGACTTTAAGGGGCGGCAGAACAAAAACGGGTTGGAAATTTACGCCGACGATGACTACGCCGGCAAAGCGCGCAAGGTGCAAAGCCTGTCGGGGGGTGAGAGCTTCTTGACCGCCCTGGCGCTGGCGTTGGCCCTCGGGGAAGTCGTTCAGCGCCACCATGGGGGCGTTGAAATCGAAGCCCTCTTCGTTGACGAAGGGTTCGGCTCCCTAGATCAAGACGCCCTGGGTGAAGCCCTGGATACCTTGCAAAGCCTGGACGGCAACCGAATGATTGGGATCATCAGCCACGTGACCGAGCTGGAGGAGCAGATCCCCGATCAGTTACAGGTGATCGCGGAGAATGGGCGCAGCAAGGTTAAATATCACCTGGCAACGGACTAA
Protein sequence:
MKPLKLTMHYFGPYEDTTIDFTRFDASPLYLIAGDTGSGKTTIFDAMCVALYGNASNERRSAEMFRSDFATPKQVTEVTFLFEHKGVTYQVYRRPRQVLTMTRGKGEKQYDPKVSLVYPVGAENPRELTKITEVNQFVQDLLGVNASQFRQLIILPQGEVQRFLMADSKTKEEILTTLFQTQLYTNWVTKLDERAKSMRDQTQDITSQLKVLMGQVDGVSDQLELDQWQVAVGDLLTEKKAELRAVTEQVTTAQKAADQLQAQLTAERRLAEDHAALVSCETQQVELKERAPQIKRLADENEETAWAQQHQTAYHEWQAGTTKLADLTKQQAACEQKQAAVKVRVQELTQVAERLKEQEPAVQERQRQVANIREKLPLFEEVAALSKRLEKERRAQVEQERTVNDQTSALTKLQAELDRVDQELQAAPDLTQAAVTIATRVQQVVRWQQAVTALGEQAKELANQEQALRDLNAQLAEAKKTAQAAQADLKEKKKARLAAVIATLASELEEGEACPICGSTTHPHVATAVQTGQEVTEATLDAAQAKVTKAETTLATLTTRQANQDSQLEKGRATFQDELATLCQAVASPAGDLEAATAAVAEAVAALDHDRQELQNAQAKETENQQRQVSLTKQIQAGQAKYQELQAAVNEGRLNVNQTQTELVNKQGQLPAELPDLASAERWLKEEEQALADFASQQTQNQDALSRAQTQLTQLTTTSQQLADSAKATAAEVDQRKRELTAALAERQAAWEVFERALARVPELAARQREVNDYRQRLASLADQRQRLVEQIAGRPKPDVEKTAGQLKKAQVKLDQLKGAVIEQGNALTRIKEIKQQVKKKAAKQGDTERQLRELSSLCALLKGQGGTQLGLQRYVQRHYFTEVLAVANQWLAKLTHGRYQMHLDGEADFKGRQNKNGLEIYADDDYAGKARKVQSLSGGESFLTALALALALGEVVQRHHGGVEIEALFVDEGFGSLDQDALGEALDTLQSLDGNRMIGIISHVTELEEQIPDQLQVIAENGRSKVKYHLATD
GenBank Info
locus_tag - FAM19471-i1-1.1_001173
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638448.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - SMC family ATPase
protein_id - extdb:FAM19471-i1-1.1_001173
Gene Locus
Located on scaffold FAM19471-i1-1_scf21
FAM19471-i1-1.1_001172
