update range to 10000 bp
locus tag: FAM19471-i1-1.1_001246 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 recU
Ortholog
 N0.HOG0003510 Holliday junction resolvase RecU
KEGG gene
 K03700 recU; recombination protein U
Gene Product
 Holliday junction resolvase RecU
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Eggnog Protein
 EP:recU
Eggnog Ortholog
 EO:COG3331
Eggnog Description
 ED:Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

Sequences

Nucleotide sequence (GC-content: 56.0 %):

ATGACGATCAGATACCCCAGTGGGCAACAACCGCCAAACGCTGGTCGGGCGGGGCAGCCAATCGTGGCGCCCCACTCCTCGAGTTTTGCCAAGCGGGGGATGTCCCTGGAAAAAGAAATCAACGACGCTAACCGTTATTACCTGGCCACTGAGCAGGCGGTGATCTACAAAAAGCCGACCCCGATCCAACTGGTGAAGGTCGACTACCCCAAGCGCAGTGCCGCCGTGGTCAAGGAGGCCTACTTCAAGCGCCCCTCGACCACTGATTATAACGGTGTCTACCAGGGTTACTACGTCGATTTTGACGCCAAGGAGACCCGGGGGAAACTTTCTTTTCCACTTAAGAACTTCCACCAACACCAGGTTGACCACTTTCGGCGGTGCCTGGCCCAGGGGGGCGTCTGTTTTGCCTTCATCCGTTTTACCACCCTTGACCTAACTTACCTACTCCCTGCCTCCGACCTGATCGCATTTTGGGATCAGCAAGGACGGGGCGGGCGTAAGTCAGTCCCCTTAACCACCATTAAAGATCGCGGCTTTCGGGTCAAGACCGGGCTCAACCCGGTGCTGGATTACCTGCCAGCTCTTGACCAACTGATCGCCGCAAACCAAGCTAAAGGAGCAGATCATGAATAA

Protein sequence:

MTIRYPSGQQPPNAGRAGQPIVAPHSSSFAKRGMSLEKEINDANRYYLATEQAVIYKKPTPIQLVKVDYPKRSAAVVKEAYFKRPSTTDYNGVYQGYYVDFDAKETRGKLSFPLKNFHQHQVDHFRRCLAQGGVCFAFIRFTTLDLTYLLPASDLIAFWDQQGRGGRKSVPLTTIKDRGFRVKTGLNPVLDYLPALDQLIAANQAKGADHE

GenBank Info

gene - recU
locus_tag - FAM19471-i1-1.1_001246
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015639180.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - Holliday junction resolvase RecU
protein_id - extdb:FAM19471-i1-1.1_001246

Gene Locus

Located on scaffold FAM19471-i1-1_scf24

FAM19471-i1-1.1_001245
FAM19471-i1-1.1_001247