update range to 10000 bp
locus tag: FAM19471-i1-1.1_001325 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 zinc-ribbon domain-containing protein
KEGG reaction
 R00434 GTP diphosphate-lyase (cyclizing; 3',5'-cyclic-GMP-forming); GTP <=> 3',5'-Cyclic GMP + Diphosphate kornec00230kornec01100
KEGG reaction
 R00089 ATP diphosphate-lyase (cyclizing; 3',5'-cyclic-AMP-forming); ATP <=> 3',5'-Cyclic AMP + Diphosphate kornec00230kornec01100
KEGG gene
 K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein kornec02020kornec02024kornec02025kornec02026kornec05111
KEGG gene
 K03220 yscD, sctD, ssaD; type III secretion protein D
KEGG gene
 K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] kornec00230kornec01100kornec02025kornec04113kornec04213
Eggnog Protein
 EP:hrpQ
Eggnog Ortholog
 EO:COG1716
Eggnog Description
 ED:histone H2A K63-linked ubiquitination
EC Number
 EC:4.6.1.1 adenylate cyclase; adenylylcyclase; adenyl cyclase; 3',5'-cyclic AMP synthetase; ATP diphosphate-lyase (cyclizing) kornec00230kornec01100

Occurs in the following pathway maps:

Pathway Description
kornec00230 Purine metabolism
kornec01100 Metabolic pathways
kornec02020 Two-component system
kornec02024 Quorum sensing
kornec02025 Biofilm formation - Pseudomonas aeruginosa
kornec02026 Biofilm formation - Escherichia coli
kornec04113 Meiosis - yeast
kornec04213 Longevity regulating pathway - multiple species
kornec05111 Biofilm formation - Vibrio cholerae

Sequences

Nucleotide sequence (GC-content: 57.9 %):

ATGATTAATCAAGGGGTAGAGATCATGCAAACATGTCCAAACTGCGGGGCCCAAATGCCTGCCGACACTAAGTCCTGTACCAACTGCGGCGCTCAGCTAGCGGTGGCCGAAGCCAAACCGGCAGCGGCGCCGCAATCAACCGCCCCAACGACGAAAGAAGAGGCGCCACAAGCGACGCCGAACGTCTGCCCAATCTGTGGCGAGCCCTACGAGGAGGGGACCAAGTTCTGTACTAACTGTGGTCAACCGCTGACCGCGGAGAAAAAGGAACCGGGGGTGGCGGCGAGCGCGATGAACGCCGCTAGTACCGCCGTTAAAAATGTCGATACCGACCGGCTCAAGGCCGGGGCGGTGGGCTACTGGAGCTGGCTGTGGGGGTCGGTGAAGGCGCCAACCAAGGTGGTGCAACCGAAGTTTAAGTACACCGGGGTCTTAACGATTGTCGGCGAAACGTTGTTGGCAATGTTAGCGATCCTCGCCGTTCTAACGCGGGCGCTTCACGCGGCCACCTCGGCGTTTGGGGGTTCCTGGTTTGACACCCTTGCCATAATCAACGGGCACACGGGCACTGGAGCAGCCTCGACCACGCCGTCCGCAACTGGCCTTTTGTTCCGGGGCTGGCTGTTTGCGATCGTCGCCGCACTGTTGATGATCGCCTGCGCCTACCTCTTGCAACGGGTCAGCCAACGGGAGCCGGAAAACGATTTTTGGGTCTTTACCAACCAGGTGGTGCACGAAACAAACCTGATCGCCTTCTTTAACCTGGCCCTGTTAGTGATCGCGCTCCTGTTTGCCTACACCACGGTGGTTATCTTCATGGTGATCTTGTTCAGCTTGGACCTGAGTTTGCTGACGGTCTCGCTGTACCGGGCGGTCTTGCGTAGCGATCACGGGGCCGGCAGCCTCGATCCGGTGTACGCCGGTCTAATTTTAGCGGTGGCAATTGGCCTAATTTACATGCTGTTCTCCTTCTTGGTGGGGCAAGAACTGGTGGCCTCCGCTTTGAAATCGTTCGGCGACTTTATGGATAGTCTATTTTAG

Protein sequence:

MINQGVEIMQTCPNCGAQMPADTKSCTNCGAQLAVAEAKPAAAPQSTAPTTKEEAPQATPNVCPICGEPYEEGTKFCTNCGQPLTAEKKEPGVAASAMNAASTAVKNVDTDRLKAGAVGYWSWLWGSVKAPTKVVQPKFKYTGVLTIVGETLLAMLAILAVLTRALHAATSAFGGSWFDTLAIINGHTGTGAASTTPSATGLLFRGWLFAIVAALLMIACAYLLQRVSQREPENDFWVFTNQVVHETNLIAFFNLALLVIALLFAYTTVVIFMVILFSLDLSLLTVSLYRAVLRSDHGAGSLDPVYAGLILAVAIGLIYMLFSFLVGQELVASALKSFGDFMDSLF

GenBank Info

locus_tag - FAM19471-i1-1.1_001325
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012390746.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - zinc-ribbon domain-containing protein
protein_id - extdb:FAM19471-i1-1.1_001325

Gene Locus

Located on scaffold FAM19471-i1-1_scf27

FAM19471-i1-1.1_001324
FAM19471-i1-1.1_001326