update range to 10000 bp
locus tag: FAM19471-i1-1.1_001324 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R04559 1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole AMP-lyase; 1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole <=> Fumarate + 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide kornec00230kornec01100kornec01110
KEGG reaction
 R01083 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming); N6-(1,2-Dicarboxyethyl)-AMP <=> Fumarate + AMP kornec00230kornec00250kornec01100kornec01240
Gene Code
 purB
Ortholog
 N0.HOG0000658 adenylosuccinate lyase
KEGG gene
 K01756 purB, ADSL; adenylosuccinate lyase [EC:4.3.2.2] kornec00230kornec00250kornec01100kornec01110kornec01240
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901293 nucleoside phosphate biosynthetic process
Gene Ontology
 GO:1901137 carbohydrate derivative biosynthetic process
Gene Ontology
 GO:1901135 carbohydrate derivative metabolic process
Gene Ontology
 GO:0090407 organophosphate biosynthetic process
Gene Ontology
 GO:0072522 purine-containing compound biosynthetic process
Gene Ontology
 GO:0072521 purine-containing compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0070626 (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity
Gene Ontology
 GO:0055086 nucleobase-containing small molecule metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0046390 ribose phosphate biosynthetic process
Gene Ontology
 GO:0046033 AMP metabolic process
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044208 'de novo' AMP biosynthetic process
Gene Ontology
 GO:0034654 nucleobase-containing compound biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019693 ribose phosphate metabolic process
Gene Ontology
 GO:0019637 organophosphate metabolic process
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0017144 -
Gene Ontology
 GO:0016842 amidine-lyase activity
Gene Ontology
 GO:0016840 carbon-nitrogen lyase activity
Gene Ontology
 GO:0016829 lyase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009260 ribonucleotide biosynthetic process
Gene Ontology
 GO:0009259 ribonucleotide metabolic process
Gene Ontology
 GO:0009168 purine ribonucleoside monophosphate biosynthetic process
Gene Ontology
 GO:0009167 purine ribonucleoside monophosphate metabolic process
Gene Ontology
 GO:0009165 nucleotide biosynthetic process
Gene Ontology
 GO:0009161 ribonucleoside monophosphate metabolic process
Gene Ontology
 GO:0009156 ribonucleoside monophosphate biosynthetic process
Gene Ontology
 GO:0009152 purine ribonucleotide biosynthetic process
Gene Ontology
 GO:0009150 purine ribonucleotide metabolic process
Gene Ontology
 GO:0009127 purine nucleoside monophosphate biosynthetic process
Gene Ontology
 GO:0009126 purine nucleoside monophosphate metabolic process
Gene Ontology
 GO:0009124 nucleoside monophosphate biosynthetic process
Gene Ontology
 GO:0009123 nucleoside monophosphate metabolic process
Gene Ontology
 GO:0009117 nucleotide metabolic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006796 phosphate-containing compound metabolic process
Gene Ontology
 GO:0006793 phosphorus metabolic process
Gene Ontology
 GO:0006753 nucleoside phosphate metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006167 AMP biosynthetic process
Gene Ontology
 GO:0006164 purine nucleotide biosynthetic process
Gene Ontology
 GO:0006163 purine nucleotide metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:purB
Eggnog Ortholog
 EO:COG0015
Eggnog Description
 ED:Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
EC Number
 EC:4.3.2.2 adenylosuccinate lyase; adenylosuccinase; succino AMP-lyase; 6-N-(1,2-dicarboxyethyl)AMP AMP-lyase; 6-N-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) kornec00230kornec00250kornec01100kornec01110
Gene Product
 adenylosuccinate lyase

Occurs in the following pathway maps:

Pathway Description
kornec00230 Purine metabolism
kornec00250 Alanine, aspartate and glutamate metabolism
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01240 Biosynthesis of cofactors

Sequences

Nucleotide sequence (GC-content: 58.5 %):

ATGATTGATCGTTACACCCGCCCGGAAATGAAGGAAATCTGGAGCGACAAGGCTCGCTACCAATGCTGGTTAGACGTTGAAATTGCCGCCGACGAAGCCTGGAGCAAGCTGGGCTACATTCCGGCCGAAGACGTCGAAAAGATTCGCCAAAACGCCACCTTCACCGTTGAAGGGATCAACGAAATTGAAGCCGTCACCCACCACGATGTGATTGCCTTTACCCGCGATGTTTCCAAGTCCTTGGGGCCGGAACGCAAGTGGGTCCACTACGGGCTGACCTCCACGGACGTCGTCGACACCGCCCAGGGCCTGCAGTTAAAGAAGGTTAACGACATCCTGCGCCAAGACATCCAGAACTTCATGGACATCCTGGCCGACCGGGCCCGCGAATTTAAGTACACCGTCTGCATGGGCCGCACCCACGGGATCCACGCCGAACCAACCACCTTTGGTTTGAAGCTGGCCCGCTGGTACTCGGAAATGAAACGGAACCAGGAACGCTTCGAGCACGCCGCTAAGGGTGTCGAAGCCGGTAAGATCTCCGGGGCGGTTGGGACCTTTGCCGAAGTCGACCCGCAAGTGGAAGCCTACGTTTGCCAAAAGCTCGGCCTGCGTCCCCAAGAAATCTCCACCCAGGTCCTGCCCCGCGACCTGCACGCCGAATACGTAGCGGCGATCGCCTTAGTCGGTACGGCCCTGGAAAACATGGCCACCGAAGTTCGTTCCCTGCAACGGACCGAAATCCACGAAGTCGAAGAACACTTTGCTAAGGGCCAAAAGGGCTCGTCAGCCATGCCGCACAAGCGGAACCCAATTGGCTCCGAAAACATCTGCGGCTGTGCCCGGGTCCTGCGGGGCAACGTGGTGACCGCCTACGAAGACGTGACCCTCTGGCACGAACGCGACATCTCCCACTCCAGTGCCGAACGGATGATTCTGCCGGACTCCACGGCGCTGTTGGACTACATGCTCCACCGCTTCGGCAAGATCATCAAGAACCTGGACGTCTTCCCGGACCGGATGAAGCACAACATGGACGAAACCCTGGGCCTGATTTACTCCGGACGGGTACTGCTCAAGCTGGTTAACTCCGGGATGACCCGTGAGGACGCCTACGACCTGATCCAAAAGTACACCGCCAAGTGCTGGGCCGACCACGTTCCGTACCGCCCGCTCTTGGAAGCCGACCCAATCGTGGCTAAGCAACTGACCAAAGAAGACCTCGATGACGCCTTCGACTACCATTGGCACCTGCGCCACGTCGATGACATCTTCCACCGGGTAGGGTTGGACTAA

Protein sequence:

MIDRYTRPEMKEIWSDKARYQCWLDVEIAADEAWSKLGYIPAEDVEKIRQNATFTVEGINEIEAVTHHDVIAFTRDVSKSLGPERKWVHYGLTSTDVVDTAQGLQLKKVNDILRQDIQNFMDILADRAREFKYTVCMGRTHGIHAEPTTFGLKLARWYSEMKRNQERFEHAAKGVEAGKISGAVGTFAEVDPQVEAYVCQKLGLRPQEISTQVLPRDLHAEYVAAIALVGTALENMATEVRSLQRTEIHEVEEHFAKGQKGSSAMPHKRNPIGSENICGCARVLRGNVVTAYEDVTLWHERDISHSSAERMILPDSTALLDYMLHRFGKIIKNLDVFPDRMKHNMDETLGLIYSGRVLLKLVNSGMTREDAYDLIQKYTAKCWADHVPYRPLLEADPIVAKQLTKEDLDDAFDYHWHLRHVDDIFHRVGLD

GenBank Info

gene - purB
locus_tag - FAM19471-i1-1.1_001324
EC_number - 4.3.2.2
inference - COORDINATES: similar to AA sequence:RefSeq:WP_006917570.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - adenylosuccinate lyase
protein_id - extdb:FAM19471-i1-1.1_001324

Gene Locus

Located on scaffold FAM19471-i1-1_scf27

FAM19471-i1-1.1_001323
FAM19471-i1-1.1_001325