update range to 10000 bp
locus tag: FAM19471-i1-1.1_001423 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 ribA
KEGG reaction
 R07281 D-ribulose 5-phosphate formate-lyase (L-3,4-dihydroxybutan-2-one 4-phosphate-forming); D-Ribulose 5-phosphate <=> L-3,4-Dihydroxybutan-2-one 4-phosphate + Formate kornec00740kornec01100kornec01110kornec01240
KEGG reaction
 R00425 GTP 7,8-8,9-dihydrolase (diphosphate-forming); GTP + 4 H2O <=> Formate + 2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + 2 Orthophosphate kornec00740kornec00790kornec01100kornec01110kornec01240
Ortholog
 N0.HOG0001698 3,4-dihydroxy-2-butanone-4-phosphate synthase
KEGG gene
 K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] kornec00740kornec00790kornec01100kornec01110kornec01240
Gene Product
 GTP cyclohydrolase II
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044283 small molecule biosynthetic process
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0042727 flavin-containing compound biosynthetic process
Gene Ontology
 GO:0042726 flavin-containing compound metabolic process
Gene Ontology
 GO:0042364 water-soluble vitamin biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019238 cyclohydrolase activity
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0017144 -
Gene Ontology
 GO:0016830 carbon-carbon lyase activity
Gene Ontology
 GO:0016829 lyase activity
Gene Ontology
 GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
Gene Ontology
 GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009231 riboflavin biosynthetic process
Gene Ontology
 GO:0009110 vitamin biosynthetic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006771 riboflavin metabolic process
Gene Ontology
 GO:0006767 water-soluble vitamin metabolic process
Gene Ontology
 GO:0006766 vitamin metabolic process
Gene Ontology
 GO:0003935 GTP cyclohydrolase II activity
Gene Ontology
 GO:0003933 GTP cyclohydrolase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:ribBA
Eggnog Ortholog
 EO:COG0108
Eggnog Description
 ED:Catalyzes the conversion of GTP to 2
EC Number
 EC:4.1.99.12 3,4-dihydroxy-2-butanone-4-phosphate synthase; DHBP synthase; L-3,4-dihydroxybutan-2-one-4-phosphate synthase kornec00740kornec01100kornec01110
EC Number
 EC:3.5.4.25 GTP cyclohydrolase II; guanosine triphosphate cyclohydrolase II; GTP-8-formylhydrolase; ribA (gene name); GTP 7,8-8,9-dihydrolase (diphosphate-forming) kornec00740kornec00790kornec01100kornec01110

Occurs in the following pathway maps:

Pathway Description
kornec00740 Riboflavin metabolism
kornec00790 Folate biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01240 Biosynthesis of cofactors

Sequences

Nucleotide sequence (GC-content: 61.7 %):

ATGGACGTTCATAAGATTCAAGCGGCCCTTACCCACCTTAAAAACGGGGGCCTGATCATCATGACCGACGACGAAGACCGCGAGGCAGAAGGTGACCTGTTAGGAATCGCCAGCCAGGTCACCCCGGCGACGGTCAACTTCATGACCAAGCGCGCCCGCGGCCTGCTCTGTGCCCCGGTTAGCGAAGCGATCGCCAAGCAACTGGGCCTGGATTTAATGGTCCAAGACAACACCGAGCCCTACCACACCGCTTTTACGGTTTCCCTAGACCACAAGTCGACCAGCACCGGAATCTCGGCCTATGACCGGGCCGCCACCATCAAGGCCCTGGCCGACCCCACCAGCACCCACGATGACTTTTACTACCCCGGCCACATCTTCCCGCTGATCGCCAAGGAGAACGGCATCTTGGCCCGTAACGGCCACACCGAAGCCGCCGTCGACCTGGCCGAGTTGGCTGGTGAGCCTGGTGCCGGCTACATCTGCGAAATTCTCGACGCCGACGGCCACATGGCCCGGCGCCCGGTCTTAGAGAAGATGGCTGAGGAACTGCGGTTGCCGATCCTGACCGTCAAAGAACTGCAAGAGTACCGGCGTTCGGTGGTCAGCCAACCGGTCCCGCCGGTCCACCTGCCCAGCGCGTACGGCGACTTTACCCTACGCCACTTTGACGACGGCAACCTGGCCCTGATCAAGGGGGACCCGACCACGACTACCCCGTTGGTCCGGGTCCACTCCGAGTGCTTCACCGGCGACGTCTTGGGCTCCCTGCGGTGCGACTGCGGGCCCCAACTCCACGCCGCCATGGAGGCCATCGACCAGGCCGGCACCGGGATCCTGATCTACCTACGCCAAGAAGGGCGCGGGATCGGTTTGCCAAACAAGCTACGGGCCTACCGCCTGCAAGAAGAAGGCTTCGACACCGTGGAAGCCAACCACCAACTGGGCTTTGCCGCCGACGAACGGACCTACGAGGCCGCTAGCCACATCCTAAGGGCGCTCCACGTTTCAACCATCAAACTCCTGACCAACAACCCCGATAAGATCAGTCAACTGGAAGAAGCCGGGATCACGGTCGCAGCCCGGGTGCCGCTGGAAATGCCGGCGACCGCCTACGACCGCGCCTACCTCAAGACCAAGCAAGAAAAGATGCACCACCTACTCAAACTCACGGAGGAAGAACAACATGCCTAA

Protein sequence:

MDVHKIQAALTHLKNGGLIIMTDDEDREAEGDLLGIASQVTPATVNFMTKRARGLLCAPVSEAIAKQLGLDLMVQDNTEPYHTAFTVSLDHKSTSTGISAYDRAATIKALADPTSTHDDFYYPGHIFPLIAKENGILARNGHTEAAVDLAELAGEPGAGYICEILDADGHMARRPVLEKMAEELRLPILTVKELQEYRRSVVSQPVPPVHLPSAYGDFTLRHFDDGNLALIKGDPTTTTPLVRVHSECFTGDVLGSLRCDCGPQLHAAMEAIDQAGTGILIYLRQEGRGIGLPNKLRAYRLQEEGFDTVEANHQLGFAADERTYEAASHILRALHVSTIKLLTNNPDKISQLEEAGITVAARVPLEMPATAYDRAYLKTKQEKMHHLLKLTEEEQHA

GenBank Info

gene - ribA
locus_tag - FAM19471-i1-1.1_001423
EC_number - 3.5.4.25
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003685114.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - GTP cyclohydrolase II
protein_id - extdb:FAM19471-i1-1.1_001423

Gene Locus

Located on scaffold FAM19471-i1-1_scf30

FAM19471-i1-1.1_001422
FAM19471-i1-1.1_001424