update range to 10000 bp
locus tag: FAM19471-i1-1.1_001509 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0003289 transposase
KEGG gene
 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein kornec02024
KEGG gene
 K07483 K07483; transposase
Gene Product
 helix-turn-helix domain-containing protein
Eggnog Ortholog
 EO:COG2963
Eggnog Description
 ED:Helix-turn-helix domain

Occurs in the following pathway maps:

Pathway Description
kornec02024 Quorum sensing

Sequences

Nucleotide sequence (GC-content: 37.0 %):

ATGACTAAATTTAATTTAGAGTTACGAATTTCTATTGTGACACAATATTTAACGGGTATTAGTTCCATTCAATTGGCCAGAAAATACCATATTGCCAACAATGAAACGATTCTCCTATGGGTTCATCGCTTTAATCGTTTTGGCATTGCAGGATTAAAACCGAGACCTATGAACTTGGAATACTCTAGTGAGTTCAAGATAGAAGTATTAAACTGGAAACAACAGCACCAAGCTTCGCTTTCAGAAACAGCACTACACTTCAATCTCTCTTCACCAAGTACTATCTGGCAATGGCAAAGAAAGTTTGATTTAAAGGGACTCAGTGGCCTAAATAGAGTGAGAGGAGATCCAAAGACTATGGCTAAGCATAAGCATAAAAAAGTAACCAAACCCACAACAGCACAAATTCAAGCACGCCATGATAAAGATGAGTTAAAGCAACTCAAGCAAGAAAATAAG

Protein sequence:

MTKFNLELRISIVTQYLTGISSIQLARKYHIANNETILLWVHRFNRFGIAGLKPRPMNLEYSSEFKIEVLNWKQQHQASLSETALHFNLSSPSTIWQWQRKFDLKGLSGLNRVRGDPKTMAKHKHKKVTKPTTAQIQARHDKDELKQLKQENK

GenBank Info

locus_tag - FAM19471-i1-1.1_001509
inference - COORDINATES: similar to AA sequence:RefSeq:WP_001748115.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - helix-turn-helix domain-containing protein
protein_id - extdb:FAM19471-i1-1.1_001509

Gene Locus

Located on scaffold FAM19471-i1-1_scf33

FAM19471-i1-1.1_001508
FAM19471-i1-1.1_001510