locus tag:
FAM19471-i1-1.1_001540
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Code
|
uvrB |
|
|
|
Ortholog
|
N0.HOG0001303 |
excinuclease ABC subunit UvrB |
|
|
KEGG gene
|
K03702 |
uvrB; excinuclease ABC subunit B |
kornec03420 |
|
Gene Product
|
excinuclease ABC subunit UvrB |
|
|
|
Eggnog Protein
|
EP:uvrB |
|
|
|
Eggnog Ortholog
|
EO:COG0556 |
|
|
|
Eggnog Description
|
ED:damaged site |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec03420
|
Nucleotide excision repair |
Sequences
Nucleotide sequence (GC-content: 53.6 %):
ATGATTTATCGCCAACCGGATAAAGAATTTCAACTTGTATCGGATTACCAACCAACCGGGGACCAGCCCGAGGCCATTGCGGCCTTGACCAAGGGGGTTGAAGAGGGTGACCACGCCCAAATTCTGCTTGGGGCGACCGGGACCGGGAAGACCTTTACGATTTCCAACGTGATTAAAAACGTCAACCGTCCGACCCTAATTCTCTCCCACAACAAAACCTTGGCCGGTCAGTTGTACGGGGAAATGAAGAAGTTTTTCCCTAATAATGCGGTGGAGTACTTTGTTTCCTATTACGATTACTATCAACCGGAGGCCTACGTTCCTTCTAGCGATACCTACATCGAAAAGGACGCCTCCATTAATGACGAAATCGACCAACTCCGCCACTCGGCGACTTCGTCTTTGATCGAACGCAACGACGTGATTGTGGTGGCGTCGGTGTCCTCGATCTTTGGGTTGGGTTCGCCAGCCGAATACCAAAACCACGTCGTTTCCCTGCGGGTCGGTCAAGAAATCCCTCGTAACCGGCTCCTGCGTGAGTTAGTTGAGATCCAATTTGACCGTAACGACATTGATTTCCAACGCGGGCGCTTCCGGGTCCGGGGCGACGTGGTGGAAATCTTCCCAGCCTCCCGGGAGGAAAAGGCGATCCGGGTTGAGTTCTTCGGTGACGAGATCGACCGGATTCGCGAAGTTGACGCCTTGACCGGCGAGGTAATCGGCGACCGGGAACACGTTTCGATCTTCCCGGCCACCCACTTTTTGACCTCCGAAGACATCATGGACCTAGCCCTGCCGGAAATCGAAGCCGACATGAAGAGCCAGGTCGCTAAGTTTACCAAGGAAGGCAAGCTCTTAGAAGCCCAGCGCCTCCAACAGCGAACGACTTACGATATCGAAATGATGCGGGAGATGGGTTACACCAACGGGATCGAAAATTATTCCCGTTACATGGACCGGCGCAAGCCCGGCGAACCCCCCTTCACCCTCTTAGACTTCTTCCCCAAGGACTTCCTGTTAATTGTCGATGAGTCACACCAGACGATGCCCCAAGTCCGCGGAATGTATAACGGTGACCGCGCCCGCAAACAGCAGCTAATCGACTACGGGTTCCGCCTGCCCAGCGCCTTAGATAACCGGCCGTTGACCCTGAAGGAGTTTGAGGGTCACGTCCACCAGGTCATCTACATGTCGGCGACGCCAGGCCCGTACGAAGAAGCTCAAACTGACCGGGTGGTCCAACAAATTATTCGGCCAACGGGGCTTTTGGATCCGACCATTGAAGTACGACCGGTGATGGGGCAAATCGACGACCTGGTTGGCGAGATTAACAAGCGGATCGAAAAAAACGAACGGGTATTGGTCACCACTTTGACCAAGAAGATGTCCGAAGACTTATCGGATTACTTAAAGGACCTTGGCTTAAAGGTCAAGTACCTGCACTCAGATATCAAGACCTTGGAACGGACCCAAATCATTCGCGACTTGCGGCTGGGTAAGTTTGACGTTTTAGTCGGCATCAACCTCTTACGGGAGGGGCTAGACATACCGGAAGTTTCCTTAGTGGCCATCTTGGATGCCGATAAGGAAGGCTTCTTGCGTAACGAACGCTCCTTGATCCAAACGATTGGGCGGGCGGCCCGCAACGCCAACGGGTCCGTGATTATGTATGCCGACACGGTTACCGATTCGATGAGGGCCGCCATCGACGAAACCAAGCGGCGGCGGACGATCCAAGAGGCCTACAATAAGGAGCACGGCATCACGCCAAAGACGATCATTAAGCCGATCCAAGAGGCAATTAAGGCCGTTAAGCCGGTAGAAGATGAGCAAGCCGATAAGGGGGCAGAATTTACCAGCAAGGACTTTGCGGCCCTAGATAAAGAGGCCCAGGCCCAGATGATCGCCGAGCTAACCGAGCAGATGAAGGCGGCCGCCAAGCGCCTAGACTTTGAACAGGCCGCTACTTTACGTGATACGGTCATGGAACTGACTAGTCGAATGAAGAAGAAATAG
Protein sequence:
MIYRQPDKEFQLVSDYQPTGDQPEAIAALTKGVEEGDHAQILLGATGTGKTFTISNVIKNVNRPTLILSHNKTLAGQLYGEMKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDQLRHSATSSLIERNDVIVVASVSSIFGLGSPAEYQNHVVSLRVGQEIPRNRLLRELVEIQFDRNDIDFQRGRFRVRGDVVEIFPASREEKAIRVEFFGDEIDRIREVDALTGEVIGDREHVSIFPATHFLTSEDIMDLALPEIEADMKSQVAKFTKEGKLLEAQRLQQRTTYDIEMMREMGYTNGIENYSRYMDRRKPGEPPFTLLDFFPKDFLLIVDESHQTMPQVRGMYNGDRARKQQLIDYGFRLPSALDNRPLTLKEFEGHVHQVIYMSATPGPYEEAQTDRVVQQIIRPTGLLDPTIEVRPVMGQIDDLVGEINKRIEKNERVLVTTLTKKMSEDLSDYLKDLGLKVKYLHSDIKTLERTQIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNERSLIQTIGRAARNANGSVIMYADTVTDSMRAAIDETKRRRTIQEAYNKEHGITPKTIIKPIQEAIKAVKPVEDEQADKGAEFTSKDFAALDKEAQAQMIAELTEQMKAAAKRLDFEQAATLRDTVMELTSRMKKK
GenBank Info
gene - uvrB
locus_tag - FAM19471-i1-1.1_001540
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012390869.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - excinuclease ABC subunit UvrB
protein_id - extdb:FAM19471-i1-1.1_001540
Gene Locus
Located on scaffold FAM19471-i1-1_scf35
FAM19471-i1-1.1_001539
