update range to 10000 bp
locus tag: FAM19471-i1-1.1_001502 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
KEGG reaction
 R08701 tRNA uridine 5-carboxymethylaminomethyl modification; tRNA containing 2-thiouridine + Glycine + Folinic acid + Reduced acceptor <=> tRNA containing 5-carboxymethylaminomethyl-2-thiouridine + Tetrahydrofolate + Acceptor + H2O
Ortholog
 N0.HOG0003538 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
Gene Code
 mnmG
KEGG gene
 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Gene Ontology
 GO:1901363 heterocyclic compound binding
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901265 nucleoside phosphate binding
Gene Ontology
 GO:0097159 organic cyclic compound binding
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0050662 obsolete coenzyme binding
Gene Ontology
 GO:0050660 flavin adenine dinucleotide binding
Gene Ontology
 GO:0048037 obsolete cofactor binding
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043414 macromolecule methylation
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043168 anion binding
Gene Ontology
 GO:0043167 ion binding
Gene Ontology
 GO:0036094 small molecule binding
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0032259 methylation
Gene Ontology
 GO:0030488 tRNA methylation
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008033 tRNA processing
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006400 tRNA modification
Gene Ontology
 GO:0006399 tRNA metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0002098 tRNA wobble uridine modification
Gene Ontology
 GO:0002097 tRNA wobble base modification
Gene Ontology
 GO:0001510 RNA methylation
Gene Ontology
 GO:0000166 nucleotide binding
Eggnog Protein
 EP:gidA
Eggnog Ortholog
 EO:COG0445
Eggnog Description
 ED:NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs

Sequences

Nucleotide sequence (GC-content: 57.8 %):

ATGGAAACCAAAGTTGTTAACTACAACGGGGGCGACTACGACGTAATCGTTGTGGGGGCGGGGCACGCCGGCTCCGAAGCCGCCCTAGCCGCTGCCCGGATGGGGAATAAGACCCTCTTGATCACGATCAGCCTGGAAATGGTCGCCTTCATGCCATGTAATCCGTCACTCGGGGGCCCGGCCAAGGGGGTCGTGGTCCGCGAAATCGACGCCCTCGGCGGTGAGATGGGTCACAACATTGATAAGACCTACATCCAGATGCGGATGCTCAACACCGGGAAGGGCCCGGCCGTGCGGGCGCTGCGGGCACAAGCCGATAAGCACGCCTACCACCGCCAGATGAAGTGGACGATTGAAAAGGAAAAGAACCTGACCCTACGCCAAGGGGTGGTTGACGACCTGATCGTAGAAGACGGCACCGTCAAGGGGGTCATCACCAACACCGGGGCGGCTTACCACGCCAAGGCAGTGGTTTTGACGGTCGGGACGGCCGCCCGGGGTAAGATCATCATCGGCGAACTCCAGTACCAATCCGGCCCGAATAACTCTAAGGCCGCCGTTAAGTTGTCCGAAGCCCTGGAGCGGCTCGGCTTTGACCTCCAGCGGTTTAAGACTGGGACGCCGCCACGAGTGGACGGGAACACGATTGATTACTCCAAGACCGAGGAACAGCCGGGTGACCAAACACCAAACCACTTCTCCTTTGACACGCCGGACACTTCCTACATCCCGGTCAAAGACCAGATTTCTTCTTGGCTAACCTACACTAACCCGACCACCCACGAAATTTTACGTAACAACCTCGACCGCGCCCCAATGTTCTCTGGGGTGATCGAAGGGGTGGGACCACGCTACTGTCCGTCAATTGAAGATAAGATCGTCCGCTTTGCCGACAAGGACCGCCACCAGGTCTTCTTGGAACCGGAAGGGCGGGACACCGACGAGTTTTACTTGGACGGGCTGTCGACGTCAATGCCAGAAGAAATCCAGCACCAGATGATCCACTCGGTGGCCGGGTTGGAGCACGCCGAACTGATGCGGCCGGGTTACGCCATCGAATACGACGTGGTAGCCCCGTACCAATTAAAGGCCACTCTGGAAACCAAGTTGGTTAACAATCTTTACACAGCTGGGCAGACCAACGGGACCTCGGGGTACGAAGAGGCGGCCGGCCAAGGCCTGATCGCCGGGATTAACGCCGGCCTGCGCGCCCAGGGCAAGGAACCGTTTGTTTTGAAGCGCTCCGACGCCTACATTGGGGTGATGATCGACGACCTAGTCACCAAGGGAACCAAGGAACCTTACCGCTTGCTAACTAGCCGGGCCGAGTACCGGTTGATCCTACGCCACGACAACGCCGACCTTCGTTTGATGGAAAAGGGACATGCAATCGGGCTGGTGTCCGATGAGCGCCTGGCGGCCATGGAAGAAAAGAAGCAACGGGTGGAAGACGAAATCGCCCGCTTGAAGGACTTCCGGATCAAACCGGGGGAAGAAATTGACGCCTTTGTGGTGGCCCACGGTGATAAGCCGCTTAAGGACGCCATCGCTGCCGATGCCTTCTTACGCCGGCCGTACGTCGACTACCCAACCCTTCTGAAATTTGTTGATGCGCCGGCCGTTGAACTGGACCGCCAGGAAGTAGAACAGGTTGAGATTCAACTTAAGTACGCCGGCTACATCGAAAAAGAAGAGGCTAAGATTGAACGCCTCAAGCGGATGGAAGCTAAGCGGATTCCAGCCGATATTGATTACCAAGCTATTGAAGGCTTAGCCACGGAAGGGCGCCAAAAGTTGGAGCAGATTCGCCCGACCACCCTCGCCCAGGCCTCCCGGATCTCCGGTGTCAACCCGGCTGACCTGGCCATCCTGTCCGTGTACCTGCGGCAGGGAAAGTTGAAGTAA

Protein sequence:

METKVVNYNGGDYDVIVVGAGHAGSEAALAAARMGNKTLLITISLEMVAFMPCNPSLGGPAKGVVVREIDALGGEMGHNIDKTYIQMRMLNTGKGPAVRALRAQADKHAYHRQMKWTIEKEKNLTLRQGVVDDLIVEDGTVKGVITNTGAAYHAKAVVLTVGTAARGKIIIGELQYQSGPNNSKAAVKLSEALERLGFDLQRFKTGTPPRVDGNTIDYSKTEEQPGDQTPNHFSFDTPDTSYIPVKDQISSWLTYTNPTTHEILRNNLDRAPMFSGVIEGVGPRYCPSIEDKIVRFADKDRHQVFLEPEGRDTDEFYLDGLSTSMPEEIQHQMIHSVAGLEHAELMRPGYAIEYDVVAPYQLKATLETKLVNNLYTAGQTNGTSGYEEAAGQGLIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLMEKGHAIGLVSDERLAAMEEKKQRVEDEIARLKDFRIKPGEEIDAFVVAHGDKPLKDAIAADAFLRRPYVDYPTLLKFVDAPAVELDRQEVEQVEIQLKYAGYIEKEEAKIERLKRMEAKRIPADIDYQAIEGLATEGRQKLEQIRPTTLAQASRISGVNPADLAILSVYLRQGKLK

GenBank Info

gene - mnmG
locus_tag - FAM19471-i1-1.1_001502
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003682279.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
protein_id - extdb:FAM19471-i1-1.1_001502

Gene Locus

Located on scaffold FAM19471-i1-1_scf33

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_001501
FAM19471-i1-1.1_001503